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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5dnl:A (1.53) BS02 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    2 5dnl:A (1.53) BS03 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    3 5dnl:B (1.53) BS02 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    4 5dnl:B (1.53) BS03 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    5 5dnl:C (1.53) BS01 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    6 5dnl:C (1.53) BS03 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    7 5ekw:A (1.1) BS01 5DL 4.2.1.19 GO:0000105 ... O23346 27717128
    8 5el9:A (1.1) BS01 5DL 4.2.1.19 GO:0000105 ... O23346 27717128 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23.0nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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