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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5d92:A (3.62) BS03 58A ?
    2.7.8.-    		 GO:0008654 ... A9WSF5
    O27985    		 26510127
    2 5d92:B (3.62) BS03 58A ?
    2.7.8.-    		 GO:0008654 ... A9WSF5
    O27985    		 26510127
    3 5d92:C (3.62) BS03 58A ?
    2.7.8.-    		 GO:0008654 ... A9WSF5
    O27985    		 26510127
    4 5d92:D (3.62) BS03 58A ?
    2.7.8.-    		 GO:0008654 ... A9WSF5
    O27985    		 26510127
    5 7b1k:A (2.2) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    6 7b1k:B (2.2) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    7 7b1l:A (1.85) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    8 7b1l:B (1.85) BS02 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    9 7b1n:A (2.8) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    10 7b1n:B (2.8) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    11 7drk:A (3.0) BS03 58A 2.7.8.5 GO:0005886 ... P63756 34901881
    12 7drk:B (3.0) BS03 58A 2.7.8.5 GO:0005886 ... P63756 34901881
    13 7pow:B (2.51) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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