Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ael:A (2.0) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    2 3ael:D (2.0) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    3 3aen:A (2.0) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    4 3aen:B (2.0) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    5 3aen:C (2.0) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    6 3aen:D (2.0) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    7 3aep:A (2.28) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    8 3aep:A (2.28) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    9 3aep:B (2.28) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    10 3aep:B (2.28) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    11 3aep:C (2.28) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    12 3aep:C (2.28) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    13 3aep:D (2.28) BS01 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    14 3aep:D (2.28) BS02 4LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    15 5x2x:A (2.0) BS01 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    16 5x2x:A (2.0) BS02 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    17 5x2x:B (2.0) BS01 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    18 5x2x:B (2.0) BS02 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    19 5x2x:C (2.0) BS01 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    20 5x2x:C (2.0) BS02 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    21 5x2x:D (2.0) BS01 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    22 5x2x:D (2.0) BS02 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    23 5x30:A (1.7) BS01 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    24 5x30:B (1.7) BS01 4LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    25 8erj:A (2.16) BS01 4LM 2.5.1.- GO:0006520 ... S0DUX5 38308582
    26 8erj:F (2.16) BS01 4LM 2.5.1.- GO:0006520 ... S0DUX5 38308582
    27 8erj:H (2.16) BS01 4LM 2.5.1.- GO:0006520 ... S0DUX5 38308582
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218