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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ai6:B (2.55) BS02 4HP 3.5.1.11 GO:0016787 ... P06875 9813130 PDBbind: -logKd/Ki=3.97, Ki=0.107mM
    2 2jbt:A (2.8) BS02 4HP 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    3 2jbt:B (2.8) BS02 4HP 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    4 2jbt:C (2.8) BS03 4HP 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    5 2jbt:D (2.8) BS03 4HP 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    6 2yaj:A (1.813) BS01 4HP 4.1.1.83 GO:0003824 ... Q38HX4 21823587
    7 2yaj:C (1.813) BS01 4HP 4.1.1.83 GO:0003824 ... Q38HX4 21823587
    8 2yyj:A (1.66) BS02 4HP 1.14.14.9 GO:0004497 ... Q5SJP8 17804419
    9 2yyj:A (1.66) BS03 4HP 1.14.14.9 GO:0004497 ... Q5SJP8 17804419
    10 2yym:A (1.7) BS02 4HP 1.14.14.9 GO:0004497 ... Q5SJP8 17804419
    11 3pcg:C (1.96) BS01 4HP 1.13.11.3 GO:0003824 ... P00436 9254599
    12 3pcg:D (1.96) BS01 4HP 1.13.11.3 GO:0003824 ... P00436 9254599
    13 3pcg:M (1.96) BS02 4HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5mM
    14 3pcg:N (1.96) BS02 4HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=5mM
    15 3pcg:O (1.96) BS02 4HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=5mM
    16 3pcg:P (1.96) BS02 4HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=5mM
    17 3pcg:Q (1.96) BS02 4HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=5mM
    18 3pcg:R (1.96) BS02 4HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=5mM
    19 5aip:A (2.3) BS01 4HP ? GO:0003677 ... Q7DD70 27105075 PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    20 5aip:B (2.3) BS01 4HP ? GO:0003677 ... Q7DD70 27105075 MOAD: Kd=1.5mM
    PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    21 7e0x:A (1.887) BS02 4HP 1.13.11.27 GO:0003868 ... P93836 34542283
    22 7e7l:A (3.53) BS01 4HP ? GO:0003824 ... A0A100YWM3 N/A
    23 7e7l:B (3.53) BS01 4HP ? GO:0003824 ... A0A100YWM3 N/A
    24 7nqg:AAA (1.1) BS01 4HP ? GO:0055085 ... Q6N8X0 34375507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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