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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hpv:A (1.9) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 N/A PDBbind: -logKd/Ki=9.22, Ki=0.60nM
    2 1hpv:B (1.9) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 N/A MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.60nM
    3 1t7j:A (2.2) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P35963 15771427 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=8.70, Kd=2.0nM
    4 1t7j:B (2.2) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P35963 15771427 PDBbind: -logKd/Ki=8.70, Kd=2.0nM
    5 3ekp:A (2.15) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=8.89, Kd=1.3nM
    6 3ekp:B (2.15) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=1.3nM
    PDBbind: -logKd/Ki=8.89, Kd=1.3nM
    7 3ekp:C (2.15) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=1.3nM
    8 3ekp:D (2.15) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830
    9 3ekv:A (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=0.39nM
    PDBbind: -logKd/Ki=9.41, Kd=0.39nM
    10 3ekv:B (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=9.41, Kd=0.39nM
    11 3em3:A (2.2) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 N/A
    12 3em3:B (2.2) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 N/A
    13 3nu3:A (1.02) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 PDBbind: -logKd/Ki=9.82, Ki=0.15nM
    14 3nu3:B (1.02) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 MOAD: Ki=0.15nM
    PDBbind: -logKd/Ki=9.82, Ki=0.15nM
    15 3nu4:A (1.2) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 PDBbind: -logKd/Ki=8.82, Ki=1.5nM
    16 3nu4:B (1.2) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 MOAD: Ki=1.5nM
    PDBbind: -logKd/Ki=8.82, Ki=1.5nM
    17 3nu5:A (1.29) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    18 3nu5:B (1.29) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 MOAD: Ki=4.5nM
    PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    19 3nu6:A (1.16) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 PDBbind: -logKd/Ki=9.30, Ki=0.5nM
    20 3nu6:B (1.16) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 MOAD: Ki=0.5nM
    PDBbind: -logKd/Ki=9.30, Ki=0.5nM
    21 3nu9:A (1.85) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 MOAD: Ki=0.9nM
    PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    22 3nu9:B (1.85) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    23 3nuj:A (1.5) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 PDBbind: -logKd/Ki=9.39, Ki=0.41nM
    24 3nuj:B (1.5) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 MOAD: Ki=0.41nM
    PDBbind: -logKd/Ki=9.39, Ki=0.41nM
    25 3nuo:A (1.35) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 PDBbind: -logKd/Ki=9.80, Ki=0.16nM
    26 3nuo:B (1.35) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 20695887 MOAD: Ki=0.16nM
    PDBbind: -logKd/Ki=9.80, Ki=0.16nM
    27 3oxv:A (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 23365446
    28 3oxv:A (1.75) BS02 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 23365446
    29 3oxv:B (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 23365446
    30 3oxv:C (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 23365446
    31 3oxv:D (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 23365446
    32 3s43:A (1.26) BS01 478 3.4.23.16 GO:0004190 ... Q7SSE3 22238126 MOAD: Ki=2.53nM
    PDBbind: -logKd/Ki=8.60, Ki=2.53nM
    33 3s43:B (1.26) BS01 478 ? GO:0004190 ... Q7SSI0 22238126 PDBbind: -logKd/Ki=8.60, Ki=2.53nM
    34 3s45:A (1.51) BS01 478 3.4.23.47 GO:0004190 ... Q9W9R3 22238126 PDBbind: -logKd/Ki=8.49, Ki=3.24nM
    35 3s45:B (1.51) BS01 478 3.4.23.47 GO:0004190 ... Q9W9R3 22238126 MOAD: Ki=3.24nM
    PDBbind: -logKd/Ki=8.49, Ki=3.24nM
    36 3sm2:A (1.75) BS01 478 ? GO:0004190 ... Q9E7M1 21951660 MOAD: Ki=0.2nM
    PDBbind: -logKd/Ki=9.70, Ki=0.2nM
    37 3sm2:B (1.75) BS01 478 ? GO:0004190 ... Q9E7M1 21951660 PDBbind: -logKd/Ki=9.70, Ki=0.2nM
    38 4j5j:A (1.8) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 23590295
    39 4j5j:B (1.8) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 23590295 MOAD: Ka=5610000M^-1
    40 4j5j:B (1.8) BS02 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 23590295 MOAD: Ka=5610000M^-1
    41 4jec:A (2.01) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 N/A P03367 23772563
    42 4jec:B (2.01) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 N/A P03367 23772563
    43 4rvj:A (1.6) BS01 478 ? GO:0004190 ... Q9J006 N/A
    44 4rvj:B (1.6) BS01 478 ? GO:0004190 ... Q9J006 N/A
    45 4rvj:C (1.6) BS01 478 ? GO:0004190 ... Q9J006 N/A
    46 4rvj:D (1.6) BS01 478 ? GO:0004190 ... Q9J006 N/A
    47 5kr0:A (1.8) BS01 478 ? GO:0004190 ... C8BD48 27576689 MOAD: Ki=0.71nM
    PDBbind: -logKd/Ki=9.15, Ki=0.71nM
    48 5kr0:B (1.8) BS01 478 ? GO:0004190 ... C8BD48 27576689 PDBbind: -logKd/Ki=9.15, Ki=0.71nM
    49 5t8h:A (1.85) BS01 478 ? GO:0004190 ... Q7SSI0 28195728
    50 5t8h:B (1.85) BS01 478 ? GO:0004190 ... Q7SSI0 28195728
    51 6p9b:A (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 31920003 MOAD: Ki=3.6nM
    52 6p9b:B (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 31920003
    53 6xct:A (1.99) BS01 478 3.4.23.1 GO:0004190 ... P00791 N/A
    54 7n6v:A (1.39) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 34419931
    55 7n6v:B (1.39) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 34419931
    56 7n6x:A (1.47) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 34419931
    57 7n6x:B (1.47) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 34419931
    58 9fvo:A (1.8) BS01 478 N/A N/A P11838 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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