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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m33:A (1.7) BS01 3OH 3.1.1.85 GO:0005515 ... P13001 12732651
    2 3s8h:A (2.7) BS01 3OH 4.3.3.7 GO:0005737 ... Q9I4W3 N/A
    3 3s8h:B (2.7) BS01 3OH 4.3.3.7 GO:0005737 ... Q9I4W3 N/A
    4 6xb9:A (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    5 6xb9:B (2.25) BS03 3OH ? GO:0005506 ... C1DN94 33662397
    6 6xb9:C (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    7 6xb9:D (2.25) BS03 3OH ? GO:0005506 ... C1DN94 33662397
    8 6xb9:E (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    9 6xb9:F (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    10 6xb9:G (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    11 6xb9:H (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    12 6xb9:I (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    13 6xb9:J (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    14 6xb9:K (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    15 6xb9:L (2.25) BS02 3OH ? GO:0005506 ... C1DN94 33662397
    16 7ms1:A (2.95) BS01 3OH ? N/A A0A0S2T163 34910871
    17 7ms3:A (3.0) BS01 3OH ? N/A A0A0S2T163 34910871
    18 7ms8:A (2.5) BS01 3OH 5.3.2.6 N/A A0A0S2T163 34910871
    19 7ms9:A (2.2) BS01 3OH 5.3.2.6 N/A A0A0S2T163 34910871
    20 7ms9:B (2.2) BS01 3OH 5.3.2.6 N/A A0A0S2T163 34910871
    21 7ms9:H (2.2) BS01 3OH 5.3.2.6 N/A A0A0S2T163 34910871
    22 7ms9:I (2.2) BS01 3OH 5.3.2.6 N/A A0A0S2T163 34910871
    23 7ms9:K (2.2) BS01 3OH 5.3.2.6 N/A A0A0S2T163 34910871
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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