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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2qw1:A (1.7) BS01 3MG ? GO:0005509 ... P0AEE5 19348466 MOAD: Ki=125uM
    PDBbind: -logKd/Ki=3.90, Ki=125uM
    2 6rg2:A (1.12) BS01 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    3 6rg2:A (1.12) BS02 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    4 6rg2:A (1.12) BS03 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    5 6rg2:A (1.12) BS05 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    6 6rg2:A (1.12) BS07 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    7 6rg2:A (1.12) BS08 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    8 6rg2:A (1.12) BS09 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    9 6rg2:B (1.12) BS02 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    10 6rg2:B (1.12) BS04 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    11 6rg2:B (1.12) BS05 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    12 6rg2:B (1.12) BS07 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    13 6rg2:B (1.12) BS08 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    14 6rg2:B (1.12) BS09 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    15 6rg2:B (1.12) BS10 3MG ? N/A Q7N8I8 32559333 MOAD: Kd=11.2mM
    16 6rgu:A (1.75) BS01 3MG ? GO:0046872 ... C7BLE4 32559333 MOAD: Kd=14.1mM
    17 6rgu:A (1.75) BS02 3MG ? GO:0046872 ... C7BLE4 32559333 MOAD: Kd=14.1mM
    18 6rgu:A (1.75) BS03 3MG ? GO:0046872 ... C7BLE4 32559333 MOAD: Kd=14.1mM
    19 6rgu:A (1.75) BS04 3MG ? GO:0046872 ... C7BLE4 32559333 MOAD: Kd=14.1mM
    20 6rgu:A (1.75) BS05 3MG ? GO:0046872 ... C7BLE4 32559333 MOAD: Kd=14.1mM
    21 6rgu:A (1.75) BS06 3MG ? GO:0046872 ... C7BLE4 32559333 MOAD: Kd=14.1mM
    22 6rgu:A (1.75) BS07 3MG ? GO:0046872 ... C7BLE4 32559333 MOAD: Kd=14.1mM
    23 6rgu:A (1.75) BS08 3MG ? GO:0046872 ... C7BLE4 32559333 MOAD: Kd=14.1mM
    24 6x9m:A (1.0) BS05 3MG ? N/A A1YIY3 33824212
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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