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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1s2g:A (2.1) BS01 3D1 2.4.2.6 GO:0016757 ... Q8RLY5 14992575
    2 1s2g:B (2.1) BS01 3D1 2.4.2.6 GO:0016757 ... Q8RLY5 14992575
    3 1s2g:C (2.1) BS01 3D1 2.4.2.6 GO:0016757 ... Q8RLY5 14992575
    4 2c5h:A (2.7) BS02 3D1 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    5 2c5h:A (2.7) BS04 3D1 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    6 2c5h:B (2.7) BS01 3D1 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    7 2c5h:B (2.7) BS03 3D1 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    8 2c5h:C (2.7) BS02 3D1 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    9 2c5h:C (2.7) BS03 3D1 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    10 2z3m:A (2.7) BS01 3D1 2.3.2.6 GO:0005737 ... P0A8P1 17891155
    11 2z3m:B (2.7) BS01 3D1 2.3.2.6 GO:0005737 ... P0A8P1 17891155
    12 2zi3:A (2.3) BS02 3D1 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18377927
    13 2zi3:B (2.3) BS02 3D1 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18377927
    14 2zi6:A (1.77) BS02 3D1 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18377927
    15 2zi6:B (1.77) BS02 3D1 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18377927
    16 2zi6:C (1.77) BS02 3D1 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18377927
    17 2zi6:D (1.77) BS02 3D1 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18377927
    18 3iar:A (1.52) BS01 3D1 3.5.4.4 GO:0000255 ... P00813 N/A
    19 3si8:A (2.15) BS04 3D1 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    20 4q7f:A (1.98) BS03 3D1 ? GO:0000166 ... Q2G1L5 N/A
    21 5m67:C (1.54) BS03 3D1 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    22 5m67:D (1.54) BS04 3D1 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    23 6zpa:A (0.860003) BS01 3D1 N/A N/A N/A 33893297
    24 6zpb:A (1.72097) BS01 3D1 N/A N/A N/A 33893297
    25 8efg:A (1.5) BS04 3D1 3.1.21.- GO:0004518 ... Q6P1N9 36881763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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