Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2enx:A (2.8) BS03 2PN 3.6.1.1 GO:0004427 ... Q3K0B5 17505113
    2 2enx:B (2.8) BS03 2PN 3.6.1.1 GO:0004427 ... Q3K0B5 17505113
    3 2haw:A (1.75) BS05 2PN 3.6.1.1 GO:0004427 ... P37487 17095506 MOAD: Kd=12uM
    PDBbind: -logKd/Ki=4.92, Kd=12uM
    4 2haw:B (1.75) BS05 2PN 3.6.1.1 GO:0004427 ... P37487 17095506 MOAD: Kd=12uM
    PDBbind: -logKd/Ki=4.92, Kd=12uM
    5 2iw4:A (2.15) BS06 2PN 3.6.1.1 GO:0004427 ... P37487 17095506 MOAD: Kd=12uM
    6 2iw4:B (2.15) BS05 2PN 3.6.1.1 GO:0004427 ... P37487 17095506 MOAD: Kd=12uM
    7 2zio:A (2.06) BS01 2PN 6.1.1.26 GO:0000049 ... Q8PWY1 19022179
    8 4a01:A (2.35) BS05 2PN 7.1.3.1 GO:0004427 ... P21616 22456709
    9 4a01:B (2.35) BS05 2PN 7.1.3.1 GO:0004427 ... P21616 22456709
    10 4y7v:A (1.8) BS02 2PN 2.7.7.99 GO:0000287 ... Q88QT2 25767118
    11 5b8h:A (2.1999) BS01 2PN 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    12 5b8h:B (2.1999) BS02 2PN 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    13 5c5v:A (2.35) BS01 2PN 3.6.1.1 GO:0000287 ... Q384W5 26494625
    14 5c5v:B (2.35) BS01 2PN 3.6.1.1 GO:0000287 ... Q384W5 26494625
    15 5lzq:A (3.495) BS06 2PN 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    16 5lzq:A (3.495) BS08 2PN 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    17 5lzq:B (3.495) BS06 2PN 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    18 5ugn:A (1.997) BS04 2PN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28759020
    19 5ugo:A (1.897) BS04 2PN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28759020
    20 6iii:A (2.113) BS01 2PN 2.7.7.108 GO:0000287 ... P77649 N/A
    21 6ll8:A (1.3) BS06 2PN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    22 6ll8:B (1.3) BS06 2PN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    23 6mn8:A (2.35) BS05 2PN 6.1.1.15 GO:0000166 ... A0A2K6VKP7 N/A
    24 6qxa:A (3.41) BS06 2PN 7.2.3.1 GO:0000287 ... Q9S5X0 31131322
    25 6qxa:B (3.41) BS06 2PN 7.2.3.1 GO:0000287 ... Q9S5X0 31131322
    26 6qxa:C (3.41) BS06 2PN 7.2.3.1 GO:0000287 ... Q9S5X0 31131322
    27 6qxa:D (3.41) BS06 2PN 7.2.3.1 GO:0000287 ... Q9S5X0 31131322
    28 7rxw:A (1.07) BS02 2PN 2.5.1.6 GO:0004478 ... P31153 34668717
    29 8b37:A (3.84) BS05 2PN 7.1.3.1 GO:0000287 ... Q8ZWI8 38182815
    30 8b37:B (3.84) BS05 2PN 7.1.3.1 GO:0000287 ... Q8ZWI8 38182815
    31 8h53:A (2.16) BS02 2PN 6.1.1.22 GO:0000166 ... O43776 38297033
    32 8h53:B (2.16) BS02 2PN 6.1.1.22 GO:0000166 ... O43776 38297033
    33 8h53:C (2.16) BS02 2PN 6.1.1.22 GO:0000166 ... O43776 38297033
    34 8h53:D (2.16) BS02 2PN 6.1.1.22 GO:0000166 ... O43776 38297033
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218