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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eqj:A (1.7) BS03 2PG 5.4.2.12 GO:0003824 ... Q9X519 10764795
    2 1o5x:B (1.1) BS01 2PG 5.3.1.1 GO:0004807 ... Q07412 14563846
    3 1o98:A (1.4) BS03 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    4 1o99:A (2.65) BS02 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    5 1one:A (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 8605183
    6 1one:B (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 8605183
    7 1p43:A (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 12846578
    8 1p43:B (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 12846578
    9 1pe1:A (1.74) BS01 2PG 2.5.1.55 GO:0005737 ... O66496 14675946
    10 1pe1:B (1.74) BS01 2PG 2.5.1.55 GO:0005737 ... O66496 14675946
    11 1zji:A (2.25) BS02 2PG 2.5.1.55 GO:0005737 ... O66496 16156656
    12 1zji:B (2.25) BS01 2PG 2.5.1.55 GO:0005737 ... O66496 16156656
    13 2al1:A (1.5) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 16309698
    14 2al2:A (1.85) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 16309698
    15 2al2:B (1.85) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 16309698
    16 2one:A (2.0) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 9376357
    17 2r45:A (2.3) BS07 2PG 1.1.5.3 GO:0004368 ... P13035 18296637
    18 2r45:B (2.3) BS05 2PG 1.1.5.3 GO:0004368 ... P13035 18296637
    19 2xh2:A (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    20 2xh2:B (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    21 2xh2:C (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    22 2xh2:D (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    23 2xh4:A (1.7) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    24 2xh4:B (1.7) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    25 2xh4:C (1.7) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    26 2xh4:D (1.7) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    27 2xh7:A (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    28 2xh7:B (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 20690637
    29 3igy:B (2.003) BS03 2PG 5.4.2.12 GO:0003824 ... Q86N96 19781556
    30 3igz:B (1.9) BS03 2PG 5.4.2.12 GO:0003824 ... Q86N96 19781556
    31 3qtp:A (1.9) BS01 2PG 4.2.1.11 GO:0000015 ... P51555 21697600
    32 3qtp:B (1.9) BS01 2PG 4.2.1.11 GO:0000015 ... P51555 21697600
    33 3ucc:A (1.5) BS02 2PG 4.2.1.11 GO:0000015 ... P09104 22437160
    34 3ucc:B (1.5) BS02 2PG 4.2.1.11 GO:0000015 ... P09104 22437160
    35 3ucd:A (1.41) BS02 2PG 4.2.1.11 GO:0000015 ... P09104 22437160
    36 3uje:A (1.55) BS02 2PG 4.2.1.11 GO:0000015 ... P09104 22437160
    37 3ujf:A (2.1) BS02 2PG 4.2.1.11 GO:0000015 ... P09104 22437160
    38 3ujr:A (1.4) BS02 2PG 4.2.1.11 GO:0000015 ... P09104 22437160
    39 3uwv:A (2.07) BS01 2PG 5.3.1.1 GO:0004807 ... Q6GIL6 22813930
    40 3uwv:B (2.07) BS01 2PG 5.3.1.1 GO:0004807 ... Q6GIL6 22813930
    41 4nwx:A (2.01) BS01 2PG 5.4.2.12 GO:0003824 ... Q2G029 25611430
    42 4qax:A (2.0) BS03 2PG 5.4.2.12 GO:0003824 ... Q2G029 N/A
    43 4tim:B (2.4) BS01 2PG 5.3.1.1 GO:0004807 ... P04789 1895291 MOAD: Ki=6.9mM
    PDBbind: -logKd/Ki=2.16, Ki=6.9mM
    44 4z1y:A (2.53) BS02 2PG 4.2.1.11 GO:0000015 ... A9WCM4 26082925
    45 4z1y:B (2.53) BS02 2PG 4.2.1.11 GO:0000015 ... A9WCM4 26082925
    46 5enl:A (2.2) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 2007121
    47 6bfy:A (1.81) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    48 6bfy:B (1.81) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    49 6bfy:C (1.81) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    50 6bfy:D (1.81) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    51 6bfy:E (1.81) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    52 6bfy:F (1.81) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    53 6bfz:C (2.21) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    54 6bfz:D (2.21) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    55 6bfz:E (2.21) BS03 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    56 6bfz:F (2.21) BS01 2PG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    57 6l7d:A (3.0) BS01 2PG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    58 6nb2:A (1.85) BS01 2PG 4.2.1.11 GO:0000015 ... Q5ZTX1 N/A
    59 6nb2:B (1.85) BS01 2PG 4.2.1.11 GO:0000015 ... Q5ZTX1 N/A
    60 7clk:A (2.15) BS02 2PG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    61 7cll:A (1.99) BS02 2PG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    62 7cll:B (1.99) BS02 2PG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    63 7cll:C (1.99) BS02 2PG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    64 7cll:D (1.99) BS02 2PG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    65 7enl:A (2.2) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 2007120
    66 7rhw:A (1.9) BS01 2PG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    67 7rhw:B (1.9) BS01 2PG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    68 7ri0:A (2.3) BS02 2PG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    69 7ugh:A (1.95) BS01 2PG 4.2.1.11 GO:0000015 ... A0A6A5BXC3 N/A
    70 7ugh:B (1.95) BS01 2PG 4.2.1.11 GO:0000015 ... A0A6A5BXC3 N/A
    71 7vrd:A (1.7) BS02 2PG 4.2.1.11 GO:0000015 ... P30575 35900099
    72 7vrd:C (1.7) BS02 2PG 4.2.1.11 GO:0000015 ... P30575 35900099
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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