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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4nkt:A (1.9) BS01 2KH 2.7.7.19
    2.7.7.52    		 N/A O13833 24322298 PDBbind: -logKd/Ki=5.97, Kd=1.08uM
    2 4nkt:B (1.9) BS01 2KH 2.7.7.19
    2.7.7.52    		 N/A O13833 24322298
    3 4y7u:A (1.7) BS02 2KH 2.7.7.99 GO:0000287 ... Q88QT2 25767118
    4 5i49:A (1.8) BS02 2KH 2.7.7.52 N/A Q8WQX5 27744351
    5 5twp:A (2.001) BS04 2KH 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    6 5twr:A (1.9) BS04 2KH 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    7 5vz7:A (1.551) BS04 2KH 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    8 5vza:A (1.501) BS04 2KH 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    9 5vzd:A (1.602) BS04 2KH 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    10 5vzg:A (1.85) BS04 2KH 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    11 5w0n:A (2.497) BS02 2KH 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    12 5w0n:B (2.497) BS02 2KH 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    13 5w0n:C (2.497) BS02 2KH 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    14 5w51:B (3.404) BS03 2KH 2.7.7.6 GO:0000428 ... P08518 28933854
    15 6bm4:B (2.951) BS03 2KH 2.7.7.6 GO:0000428 ... P08518 29487211
    16 6e0l:A (2.25) BS02 2KH 2.7.7.- GO:0005524 ... G2SLH8 30787435
    17 6i0s:A (1.9) BS01 2KH 2.7.7.52 N/A Q9VI58 30462292
    18 6sa0:A (2.209) BS04 2KH ? GO:0046872 ... A0R5T1 32826907
    19 6sa0:D (2.209) BS04 2KH ? GO:0046872 ... A0R5T1 32826907
    20 6szv:B (2.5) BS04 2KH 2.7.7.48 GO:0000166 ... H6QM91 32304664
    21 6t0v:B (3.02) BS04 2KH 2.7.7.48 GO:0000166 ... H6QM91 32304664
    22 7ojn:L (2.92) BS05 2KH 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    23 7om7:A (2.4) BS03 2KH ? N/A Q6A562 34203380
    24 7om7:B (2.4) BS03 2KH ? N/A Q6A562 34203380
    25 7x4t:A (2.2) BS01 2KH 2.7.7.- GO:0000166 ... P0DSP3 37604815
    26 7x4t:A (2.2) BS02 2KH 2.7.7.- GO:0000166 ... P0DSP3 37604815
    27 7x4t:B (2.2) BS01 2KH 2.7.7.- GO:0000166 ... P0DSP3 37604815
    28 7x4t:B (2.2) BS02 2KH 2.7.7.- GO:0000166 ... P0DSP3 37604815
    29 8as7:A (2.6) BS06 2KH 2.7.7.48 GO:0001172 ... U3GU88 36651274
    30 8asb:A (3.6) BS05 2KH 2.7.7.48 GO:0001172 ... U3GU88 36651274
    31 8asd:A (2.6) BS07 2KH 2.7.7.48 GO:0001172 ... U3GU88 36651274
    32 8pnq:B (2.88) BS03 2KH 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    33 8r6y:A (3.4) BS05 2KH 2.7.7.48 GO:0001172 ... I0DF35 38709882
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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