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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ojr:A (1.35) BS04 2HA 4.1.2.19 GO:0005737 ... P32169 12962479
    2 1un9:A (3.1) BS04 2HA 2.7.1.29 GO:0004371 ... P45510 12966101
    3 1un9:B (3.1) BS04 2HA 2.7.1.29 GO:0004371 ... P45510 12966101
    4 3ct4:A (2.498) BS01 2HA 2.7.1.121 GO:0004371 ... Q9CIV8 18957416
    5 3ct4:B (2.498) BS01 2HA 2.7.1.121 GO:0004371 ... Q9CIV8 18957416
    6 3ct4:C (2.498) BS01 2HA 2.7.1.121 GO:0004371 ... Q9CIV8 18957416
    7 3pnq:D (2.2) BS01 2HA 2.7.1.121 GO:0004371 ... P76015 21209328
    8 6f2f:C (1.65) BS02 2HA 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    9 8b4g:AAA (1.496) BS02 2HA 3.2.1.4 GO:0004497 ... G3XAP7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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