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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xny:A (2.2) BS01 1VU 6.4.1.3 GO:0003989 ... Q9X4K7 15518551
    2 1xny:A (2.2) BS03 1VU 6.4.1.3 GO:0003989 ... Q9X4K7 15518551
    3 1xny:B (2.2) BS01 1VU 6.4.1.3 GO:0003989 ... Q9X4K7 15518551
    4 1xny:B (2.2) BS03 1VU 6.4.1.3 GO:0003989 ... Q9X4K7 15518551
    5 4l80:A (2.008) BS01 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    6 4l80:A (2.008) BS04 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    7 4l80:B (2.008) BS01 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    8 4l80:B (2.008) BS04 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    9 4l80:C (2.008) BS01 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    10 4l80:C (2.008) BS02 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    11 4l80:D (2.008) BS01 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    12 4l80:D (2.008) BS04 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    13 4l80:E (2.008) BS01 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    14 4l80:E (2.008) BS04 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    15 4l80:F (2.008) BS01 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    16 4l80:F (2.008) BS02 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... S5N020 24206647
    17 4l9y:A (2.102) BS02 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... Q3J5L6 24206647
    18 4l9y:B (2.102) BS01 1VU 4.1.3.24
    4.1.3.25    		 GO:0000287 ... Q3J5L6 24206647
    19 4mzq:A (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    20 4mzq:A (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    21 4mzq:B (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    22 4mzq:B (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    23 4mzq:C (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    24 4mzq:C (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    25 4mzq:D (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    26 4mzq:D (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    27 4mzq:E (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    28 4mzq:E (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    29 4mzq:F (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    30 4mzq:F (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    31 4mzq:G (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    32 4mzq:G (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    33 4mzq:H (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    34 4mzq:H (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    35 4mzq:I (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    36 4mzq:I (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    37 4mzq:J (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    38 4mzq:J (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    39 4mzq:K (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    40 4mzq:K (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    41 4mzq:L (1.587) BS01 1VU ? GO:0016829 ... Q6KC22 24623648
    42 4mzq:L (1.587) BS02 1VU ? GO:0016829 ... Q6KC22 24623648
    43 5h84:A (2.0) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 27377381
    44 5jfm:A (2.516) BS01 1VU ? GO:0000166 ... Q21A49 28202954
    45 5jfm:C (2.516) BS01 1VU ? GO:0000166 ... Q21A49 28202954
    46 5jfm:D (2.516) BS01 1VU ? GO:0000166 ... Q21A49 28202954
    47 5jfm:E (2.516) BS01 1VU ? GO:0000166 ... Q21A49 28202954
    48 5jfm:F (2.516) BS01 1VU ? GO:0000166 ... Q21A49 28202954
    49 5jfm:G (2.516) BS01 1VU ? GO:0000166 ... Q21A49 28202954
    50 5jfm:H (2.516) BS01 1VU ? GO:0000166 ... Q21A49 28202954
    51 5jfn:A (1.9) BS01 1VU ? GO:0000166 ... Q21A49 28202954
    52 5lkx:A (2.52) BS05 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    53 5vxo:A (2.266) BS01 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25    		 GO:0000287 ... Q8N0X4 29056341
    54 5vxo:B (2.266) BS01 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25    		 GO:0000287 ... Q8N0X4 29056341
    55 5vxo:B (2.266) BS02 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25    		 GO:0000287 ... Q8N0X4 29056341
    56 5vxo:C (2.266) BS01 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25    		 GO:0000287 ... Q8N0X4 29056341
    57 5vxo:C (2.266) BS02 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25    		 GO:0000287 ... Q8N0X4 29056341
    58 5wci:A (1.78) BS02 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q9H7Z6 N/A
    59 6bjb:A (1.50001) BS01 1VU ? GO:0003985 ... F1KYX0 29381332
    60 6bjb:B (1.50001) BS01 1VU ? GO:0003985 ... F1KYX0 29381332
    61 7d0p:A (1.8) BS02 1VU 2.3.1.48 GO:0004402 ... O95251 34259319
    62 8h66:A (2.8) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    63 8h66:B (2.8) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    64 8h66:C (2.8) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    65 8h66:D (2.8) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    66 8h66:E (2.8) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    67 8h66:F (2.8) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    68 8h66:G (2.8) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    69 8h66:H (2.8) BS01 1VU 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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