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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4k4h:A (2.1) BS04 1RZ 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 25015085
    2 4k4h:E (2.1) BS04 1RZ 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 25015085
    3 4k4h:I (2.1) BS04 1RZ 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 25015085
    4 4k4h:M (2.1) BS04 1RZ 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 25015085
    5 5tb8:A (2.0) BS04 1RZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    6 5tbc:A (1.85) BS04 1RZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    7 5u2s:A (2.3) BS04 1RZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28402499
    8 6kdj:A (2.51) BS02 1RZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32080249
    9 6kdj:C (2.51) BS02 1RZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32080249
    10 6kdo:C (2.573) BS02 1RZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32080249
    11 6oun:A (2.656) BS05 1RZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 31301259
    12 6ujy:A (2.59456) BS03 1RZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 31872074
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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