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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3m6b:A (1.3) BS01 1RG 3.5.2.6 GO:0005576 ... P9WKD3 20353175
    2 3m6b:A (1.3) BS02 1RG 3.5.2.6 GO:0005576 ... P9WKD3 20353175
    3 3zgp:A (-1.00) BS01 1RG 2.3.2.12 GO:0016740 ... Q3Y185 23574509
    4 4gcs:A (1.87) BS01 1RG ? GO:0001530 ... P02931 23201272
    5 4qu3:A (1.402) BS01 1RG 3.5.2.6 GO:0008800 ... Q93F76 25485972
    6 4qu3:B (1.402) BS01 1RG 3.5.2.6 GO:0008800 ... Q93F76 25485972
    7 6p99:A (2.25) BS01 1RG 3.5.2.6 GO:0008658 ... Q6XEC0 31358584
    8 6skr:A (1.85) BS01 1RG 3.5.2.6 GO:0008658 ... Q7BNC2 32683794
    9 6skr:B (1.85) BS01 1RG 3.5.2.6 GO:0008658 ... Q7BNC2 32683794
    10 7kgm:A (2.6) BS01 1RG ? GO:0000270 ... D2TS62 33139287
    11 7kgn:A (3.6) BS01 1RG ? GO:0000270 ... Q8ZQB5 33139287
    12 7rpd:A (1.95) BS01 1RG 3.5.2.6 GO:0008658 ... Q8RLA6 35709986
    13 7rpe:A (1.53) BS01 1RG 3.5.2.6 GO:0008658 ... Q8RLA6 35709986
    14 8ixx:A (1.7) BS01 1RG 3.5.2.6 GO:0008800 ... Q01166 N/A
    15 8vbw:A (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    16 8vbw:B (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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