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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2f6x:A (2.0) BS01 1GP 2.5.1.41 GO:0000287 ... O29844 16377641
    2 2f6x:B (2.0) BS01 1GP 2.5.1.41 GO:0000287 ... O29844 16377641
    3 2vyv:D (2.38) BS01 1GP 1.2.1.12 GO:0006006 ... Q9ESV6 19542219
    4 2y61:A (0.99) BS01 1GP 5.3.1.1 GO:0004807 ... P48499 21633986
    5 2y62:A (1.08) BS02 1GP 5.3.1.1 GO:0004807 ... P48499 21633986
    6 3ew5:A (3.1) BS01 1GP 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A Q98VG9 19966415
    7 3ew5:B (3.1) BS01 1GP 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A Q98VG9 19966415
    8 3ew5:C (3.1) BS01 1GP 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A Q98VG9 19966415
    9 3k42:A (2.3) BS01 1GP ? GO:0005768 ... P11456 19928875
    10 3vzy:B (1.63) BS01 1GP 2.5.1.n9 GO:0000287 ... O34790 23322418
    11 3w00:B (2.5) BS02 1GP 2.5.1.n9 GO:0000287 ... O34790 23322418
    12 4jej:A (1.52) BS01 1GP 2.5.1.41 GO:0000107 ... A5FJK8 24684232
    13 4mm1:A (2.8004) BS01 1GP 2.5.1.41 GO:0000107 ... O26652 24684232
    14 4mm1:B (2.8004) BS01 1GP 2.5.1.41 GO:0000107 ... O26652 24684232
    15 4mm1:C (2.8004) BS01 1GP 2.5.1.41 GO:0000107 ... O26652 24684232
    16 4mm1:D (2.8004) BS01 1GP 2.5.1.41 GO:0000107 ... O26652 24684232
    17 4mm1:E (2.8004) BS01 1GP 2.5.1.41 GO:0000107 ... O26652 24684232
    18 4mm1:F (2.8004) BS01 1GP 2.5.1.41 GO:0000107 ... O26652 24684232
    19 4nae:A (2.0) BS01 1GP 2.5.1.n9 GO:0000287 ... Q5L3C1 24684232
    20 4nae:B (2.0) BS01 1GP 2.5.1.n9 GO:0000287 ... Q5L3C1 24684232
    21 4rgq:B (2.23) BS03 1GP 1.1.1.261 GO:0005737 ... Q58122 26175150
    22 4xc3:H (1.63) BS02 1GP N/A N/A N/A 26777395
    23 4xc3:L (1.63) BS02 1GP N/A N/A N/A 26777395
    24 5wcx:A (2.0) BS02 1GP ? N/A Q9A0F9 N/A
    25 5wcx:B (2.0) BS02 1GP ? N/A Q9A0F9 N/A
    26 6dgm:A (1.49) BS02 1GP ? N/A Q48UA4 30936502
    27 6dgm:B (1.49) BS02 1GP ? N/A Q48UA4 30936502
    28 6jo3:A (2.35) BS01 1GP 2.5.1.41 GO:0000287 ... Q9HJH3 31282866
    29 6xnc:A (2.11) BS01 1GP 4.2.1.20 GO:0000162 ... P00929 33428374
    30 6xoy:A (1.64) BS01 1GP 4.2.1.20 GO:0000162 ... P00929 33428374
    31 6xrh:A (1.44) BS01 1GP 4.2.1.20 GO:0000162 ... P00929 33428374
    32 6xt0:A (1.37) BS01 1GP 4.2.1.20 GO:0000162 ... P00929 33428374
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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