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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1add:A (2.4) BS02 1DA 3.5.4.4 GO:0000255 ... P03958 8439534 MOAD: Ki=0.18uM
    PDBbind: -logKd/Ki=6.74, Ki=0.18uM
    2 5lmz:A (2.55) BS01 1DA 2.5.1.63
    2.5.1.94
    3.13.2.3    		 GO:0016740 ... W0W999 24449539
    3 5lmz:B (2.55) BS01 1DA 2.5.1.63
    2.5.1.94
    3.13.2.3    		 GO:0016740 ... W0W999 24449539
    4 7xto:A (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    5 7xto:A (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    6 7xto:B (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    7 7xto:B (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    8 7xto:C (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    9 7xto:C (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    10 7xto:D (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    11 7xto:D (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    12 7xto:E (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    13 7xto:E (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    14 7xto:F (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    15 7xto:F (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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