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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kpg:A (2.0) BS03 16A 2.1.1.79 GO:0005737 ... P9WPB7 11756461
    2 1kpg:B (2.0) BS03 16A 2.1.1.79 GO:0005737 ... P9WPB7 11756461
    3 1kpg:C (2.0) BS03 16A 2.1.1.79 GO:0005737 ... P9WPB7 11756461
    4 1kpg:D (2.0) BS03 16A 2.1.1.79 GO:0005737 ... P9WPB7 11756461
    5 1tpy:A (2.2) BS03 16A 2.1.1.79 GO:0005515 ... Q79FX6 N/A
    6 3b00:A (1.74) BS01 16A 3.2.1.39 GO:0004553 ... Q9WXN1 22065588
    7 3b00:B (1.74) BS01 16A 3.2.1.39 GO:0004553 ... Q9WXN1 22065588
    8 3b00:D (1.74) BS01 16A 3.2.1.39 GO:0004553 ... Q9WXN1 22065588
    9 3hf0:A (2.1) BS01 16A N/A N/A N/A N/A
    10 3p73:A (1.32) BS01 16A ? N/A Q9BCW3 21151886
    11 5hxw:A (2.63) BS02 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    12 5hxw:A (2.63) BS03 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    13 5hxw:A (2.63) BS04 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    14 5hxw:B (2.63) BS02 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    15 5hxw:B (2.63) BS03 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    16 5hxw:B (2.63) BS04 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    17 5hxw:B (2.63) BS05 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    18 5hxw:C (2.63) BS02 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    19 5hxw:D (2.63) BS02 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    20 5hxw:D (2.63) BS03 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    21 5hxw:E (2.63) BS02 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    22 5hxw:F (2.63) BS02 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    23 5hxw:F (2.63) BS03 16A 1.4.3.2 GO:0000166 ... Q9LCB2 27422658
    24 6wl5:A (1.4) BS01 16A N/A N/A N/A 33976201
    25 6wl5:A (1.4) BS02 16A N/A N/A N/A 33976201
    26 6wl5:A (1.4) BS03 16A N/A N/A N/A 33976201
    27 6wl5:B (1.4) BS01 16A N/A N/A N/A 33976201
    28 6wl5:B (1.4) BS02 16A N/A N/A N/A 33976201
    29 6wl5:B (1.4) BS03 16A N/A N/A N/A 33976201
    30 6wl5:C (1.4) BS01 16A N/A N/A N/A 33976201
    31 6wl5:C (1.4) BS02 16A N/A N/A N/A 33976201
    32 6wl5:C (1.4) BS03 16A N/A N/A N/A 33976201
    33 6wl5:D (1.4) BS01 16A N/A N/A N/A 33976201
    34 6wl5:D (1.4) BS02 16A N/A N/A N/A 33976201
    35 7jj1:A (3.0) BS02 16A 1.14.13.70 GO:0004497 ... Q603T8 N/A
    36 7jj1:B (3.0) BS02 16A 1.14.13.70 GO:0004497 ... Q603T8 N/A
    37 7jj1:C (3.0) BS02 16A 1.14.13.70 GO:0004497 ... Q603T8 N/A
    38 8vxu:A (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    39 8vxu:B (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    40 8vxu:C (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    41 8vxu:C (2.29) BS02 16A ? GO:0005886 ... U2EQ00 38865266
    42 8vxu:D (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    43 8vxu:E (2.29) BS01 16A N/A N/A N/A 38865266
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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