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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ndf:A (1.9) BS01 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 12526798
    2 1ndf:B (1.9) BS01 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 12526798
    3 1s5o:A (1.8) BS01 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P43155 15099582
    4 1t7o:A (2.3) BS01 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 15155726
    5 1t7q:A (1.8) BS02 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 15155726
    6 1t7q:B (1.8) BS02 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 15155726
    7 1xl8:A (2.2) BS01 152 2.3.1.137 GO:0005739 ... Q9DC50 15492013
    8 2h3p:A (2.2) BS02 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 16870616
    9 2h3p:B (2.2) BS02 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 16870616
    10 2h3u:A (1.9) BS02 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 16870616
    11 2h3u:B (1.9) BS02 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 16870616
    12 3hfx:A (3.15) BS01 152 ? GO:0005886 ... P31553 20357772
    13 3hfx:A (3.15) BS02 152 ? GO:0005886 ... P31553 20357772
    14 3hfx:A (3.15) BS03 152 ? GO:0005886 ... P31553 20357772
    15 5n3n:A (1.224) BS01 152 2.7.11.11 GO:0000287 ... P25321 N/A
    16 6eyl:A (1.5) BS01 152 ? GO:0022857 ... Q45462 N/A
    17 6eyl:B (1.5) BS01 152 ? GO:0022857 ... Q45462 N/A
    18 6y9c:A (1.8) BS02 152 1.14.13.239 GO:0005506 ... D0C9N6 36617384
    19 6y9d:A (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    20 6y9d:B (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    21 6y9d:C (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    22 6y9d:D (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    23 6y9d:E (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    24 6y9d:F (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    25 6y9d:G (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    26 6y9d:H (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    27 6y9d:I (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    28 6y9d:J (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    29 6y9d:K (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    30 6y9d:L (1.97) BS03 152 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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