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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gj4:H (1.81) BS03 132 3.4.21.5 GO:0004252 ... P00734 11731301 PDBbind: -logKd/Ki=4.07, Ki=85uM
    BindingDB: Ki=60000nM
    2 1gj6:A (1.5) BS02 132 3.4.21.4 GO:0004175 ... P00760 11731301 MOAD: Ki=0.23uM
    PDBbind: -logKd/Ki=7.00, Ki=0.10uM
    BindingDB: Ki=100nM
    3 1gj7:B (1.5) BS02 132 3.4.21.73 GO:0004252 ... P00749 11731301 MOAD: Ki=0.009uM
    PDBbind: -logKd/Ki=7.89, Ki=0.013uM
    BindingDB: Ki=14nM
    4 1o5e:H (1.75) BS01 132 3.4.21.106 GO:0004252 ... P05981 15522303 MOAD: Ki=1.8uM
    PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    BindingDB: Ki=1800nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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