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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1exi:A (3.12) BS02 118 ? GO:0003677 ... P39075 11201751
    2 1exi:A (3.12) BS03 118 ? GO:0003677 ... P39075 11201751
    3 6xl5:G (2.5) BS04 118 N/A GO:0003677 ... N/A 33976201
    4 6xl5:H (2.5) BS04 118 N/A GO:0003677 ... N/A 33976201
    5 6xl6:G (3.0) BS04 118 N/A GO:0003677 ... N/A 33976201
    6 6xl6:H (3.0) BS04 118 N/A GO:0003677 ... N/A 33976201
    7 6xl9:F (2.5) BS03 118 ? GO:0000345 ... P00579 33976201
    8 6xl9:G (2.5) BS03 118 N/A GO:0003677 ... N/A 33976201
    9 6xl9:H (2.5) BS03 118 N/A GO:0003677 ... N/A 33976201
    10 6xla:G (3.1) BS03 118 N/A GO:0003677 ... N/A 33976201
    11 6xla:H (3.1) BS03 118 N/A GO:0003677 ... N/A 33976201
    12 6xlj:C (2.7) BS06 118 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    13 6xlj:D (2.7) BS04 118 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    14 6xlj:G (2.7) BS04 118 N/A GO:0003677 ... N/A 33976201
    15 6xlj:H (2.7) BS04 118 N/A GO:0003677 ... N/A 33976201
    16 6xlk:G (3.3) BS04 118 N/A GO:0003677 ... N/A 33976201
    17 6xlk:H (3.3) BS04 118 N/A GO:0003677 ... N/A 33976201
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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