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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4edv:A (2.01) BS01 0O2 2.7.7.101 GO:0003896 ... O05338 22795082
    2 4jk2:D (4.201) BS03 0O2 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    3 4jk2:E (4.201) BS01 0O2 2.7.7.6 GO:0000345 ... P0A800 23620295
    4 4qrh:B (1.65) BS01 0O2 2.7.4.8 GO:0004385 ... A0A0J9X1Z9 25661490 MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    5 4qrh:C (1.65) BS01 0O2 2.7.4.8 GO:0004385 ... A0A0J9X1Z9 25661490 MOAD: Ki=7uM
    6 4qrh:D (1.65) BS01 0O2 2.7.4.8 GO:0004385 ... A0A0J9X1Z9 25661490 MOAD: Ki=7uM
    7 5ded:A (2.942) BS01 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    8 5ded:A (2.942) BS02 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    9 5ded:B (2.942) BS01 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    10 5ded:B (2.942) BS02 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    11 5ded:C (2.942) BS01 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    12 5ded:C (2.942) BS02 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    13 5ded:D (2.942) BS01 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    14 5ded:D (2.942) BS02 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    15 5ded:E (2.942) BS01 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    16 5ded:E (2.942) BS02 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    17 5ded:F (2.942) BS01 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    18 5ded:F (2.942) BS02 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    19 5ded:G (2.942) BS01 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    20 5ded:G (2.942) BS02 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    21 5ded:H (2.942) BS01 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    22 5ded:H (2.942) BS02 0O2 2.7.6.5 GO:0005524 ... O31611 26460002
    23 6ex0:A (2.78) BS01 0O2 2.7.6.5 GO:0008728 ... W8U368 29326162
    24 6ex0:B (2.78) BS01 0O2 2.7.6.5 GO:0008728 ... W8U368 29326162
    25 6g15:A (1.65) BS01 0O2 ? GO:0003924 ... A0A0H2XK72 30366986
    26 6g15:B (1.65) BS01 0O2 ? GO:0003924 ... A0A0H2XK72 30366986
    27 6gfm:A (2.77) BS01 0O2 3.2.2.-
    3.2.2.10
    3.2.2.4    		 GO:0005829 ... P0ADR8 31023582
    28 6vcl:B (2.06) BS03 0O2 3.6.1.- GO:0000287 ... P0A776 31960065 MOAD: ic50=54.4uM
    29 7o9h:A (2.4) BS01 0O2 3.6.5.4 GO:0005525 ... P10121 35217658
    30 7o9h:B (2.4) BS01 0O2 3.6.5.4 GO:0005525 ... P10121 35217658
    31 7o9i:A (2.49) BS01 0O2 3.6.5.4 GO:0003924 ... P0AGD7 35217658
    32 7oiw:A (2.63) BS01 0O2 2.7.6.5 GO:0015969 ... Q931Q4 N/A
    33 7oiw:A (2.63) BS02 0O2 2.7.6.5 GO:0015969 ... Q931Q4 N/A
    34 7oiw:B (2.63) BS01 0O2 2.7.6.5 GO:0015969 ... Q931Q4 N/A
    35 7oiw:B (2.63) BS02 0O2 2.7.6.5 GO:0015969 ... Q931Q4 N/A
    36 8q3o:A (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    37 8q3o:B (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    38 8q3o:B (3.0) BS02 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    39 8q3o:C (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    40 8q3o:C (3.0) BS02 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    41 8q3o:D (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    42 8q3o:E (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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