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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4e5q:A (1.7024) BS02 0NM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25286933 BindingDB: Ki=30000nM
    2 4qef:A (1.469) BS02 0NM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25286933 BindingDB: Ki=30000nM
    3 4udy:X (1.09) BS05 0NM 1.2.7.4 GO:0003824 ... Q9F8A8 25926100
    4 8k6h:A (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    5 8k6h:B (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    6 8k6h:C (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    7 8k6h:D (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    8 8k6h:E (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    9 8k6h:F (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    10 8k6h:G (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    11 8k6h:H (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    12 8k6h:I (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    13 8k6h:J (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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