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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4e5h:D (2.158) BS03 0N8 3.1.-.- GO:0003723 ... Q5EP34 22876176 MOAD: ic50=0.43uM
    PDBbind: -logKd/Ki=6.37, IC50=0.43uM
    2 5cgv:A (2.17) BS03 0N8 3.1.-.- GO:0003723 ... C3W5S0 26976575 PDBbind: -logKd/Ki=6.47, Ki=0.34uM
    3 5d8u:A (2.29) BS03 0N8 3.1.-.- GO:0003723 ... C3W5S0 26976575 MOAD: Kd=949nM
    4 5d9j:A (1.85) BS03 0N8 3.1.-.- GO:0003723 ... C3W5S0 26976575 MOAD: Kd=22nM
    5 5fdg:A (2.1) BS03 0N8 3.1.-.- GO:0003723 ... P03433 27088785 PDBbind: -logKd/Ki=6.37, IC50=0.43uM
    BindingDB: IC50=430nM
    6 5t2t:A (1.967) BS02 0N8 2.7.7.48
    3.1.-.-    		 N/A P14240 29765612 PDBbind: -logKd/Ki=6.29, Kd=0.51uM
    7 7oa4:AAA (2.9) BS01 0N8 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    8 7oa4:BBB (2.9) BS01 0N8 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    9 7oa4:DDD (2.9) BS01 0N8 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    10 7oa4:GGG (2.9) BS01 0N8 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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