Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 87 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4dl2:A (2.15) BS05 0KX 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    2 4dl3:A (2.1) BS05 0KX 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    3 4dl4:A (2.0) BS05 0KX 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    4 4dl5:A (2.92) BS05 0KX 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    5 4irc:A (2.67) BS04 0KX 2.7.7.7 GO:0000287 ... Q47155 23525461
    6 4irc:F (2.67) BS03 0KX 2.7.7.7 GO:0000287 ... Q47155 23525461
    7 4mfc:A (2.13) BS04 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24694247
    8 4nlk:A (2.494) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24425881
    9 4ny8:A (2.246) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24694247
    10 4o3n:A (1.579) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    11 4o3p:A (1.72) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    12 4o3r:A (1.62) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13 4o3s:A (1.717) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    14 4o5k:A (2.058) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24966350
    15 4pha:A (2.52) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25200079
    16 4phd:A (2.21) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25200079
    17 4q43:A (2.45) BS04 0KX 2.7.7.7 GO:0000287 ... Q47155 25497730
    18 4q43:F (2.45) BS03 0KX 2.7.7.7 GO:0000287 ... Q47155 25497730
    19 4q8e:A (1.549) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 24927576
    20 4ru9:A (2.65) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 25988947
    21 4tuq:A (2.367) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25237188
    22 4tur:A (2.169) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25237188
    23 4tus:A (2.42) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25237188
    24 4u7c:A (2.8) BS04 0KX 2.7.7.7 GO:0003684 ... Q9UBT6 27034468
    25 4u7c:B (2.8) BS05 0KX 2.7.7.7 GO:0003684 ... Q9UBT6 27034468
    26 4ymn:A (2.591) BS04 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29957995
    27 4ymo:A (2.148) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29957995
    28 4z6c:A (2.677) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29301983
    29 5eoz:A (2.088) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29957995
    30 5f9n:A (2.23) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    31 5kt2:A (2.488) BS03 0KX 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    32 5kt3:A (2.64) BS03 0KX 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    33 5kt4:A (2.78) BS03 0KX 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    34 5kt5:A (2.798) BS04 0KX 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    35 5kt6:A (3.54) BS03 0KX 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    36 5kt7:A (3.151) BS04 0KX 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    37 5l1k:A (1.82) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    38 5l1l:A (1.62) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    39 5w2a:A (2.9) BS04 0KX 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    40 5w2a:B (2.9) BS04 0KX 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    41 6brx:A (2.8) BS07 0KX 2.7.7.7 GO:0003684 ... Q9UBT6 29715472
    42 6brx:B (2.8) BS05 0KX 2.7.7.7 GO:0003684 ... Q9UBT6 29715472
    43 6cpq:A (1.93) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    44 6cu9:A (2.04) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    45 6jul:A (2.3) BS03 0KX 2.7.7.7 GO:0000287 ... A0QR77 31544946
    46 6jul:F (2.3) BS03 0KX 2.7.7.7 GO:0000287 ... A0QR77 31544946
    47 6jum:A (1.78) BS04 0KX 2.7.7.7 GO:0000287 ... A0QR77 31544946
    48 6jum:F (1.78) BS04 0KX 2.7.7.7 GO:0000287 ... A0QR77 31544946
    49 6jun:A (2.51) BS05 0KX 2.7.7.7 GO:0000287 ... A0QR77 31544946
    50 6jun:F (2.51) BS03 0KX 2.7.7.7 GO:0000287 ... A0QR77 31544946
    51 6juo:A (2.16) BS03 0KX 2.7.7.7 GO:0000287 ... A0QR77 31544946
    52 6juo:F (2.16) BS03 0KX 2.7.7.7 GO:0000287 ... A0QR77 31544946
    53 6jup:A (2.44) BS03 0KX 2.7.7.7 GO:0000287 ... Q47155 31544946
    54 6jup:F (2.44) BS03 0KX 2.7.7.7 GO:0000287 ... Q47155 31544946
    55 6mq8:A (1.969) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 33258913
    56 6mxo:A (2.04) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 30709915
    57 6p1p:A (1.75) BS04 0KX 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    58 6p1v:A (1.95) BS04 0KX 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    59 6sqz:A (1.9) BS03 0KX 3.6.1.12 GO:0000166 ... Q9QY93 31954130
    60 6sqz:D (1.9) BS03 0KX 3.6.1.12 GO:0000166 ... Q9QY93 31954130
    61 6txc:A (2.84) BS02 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    62 6txc:B (2.84) BS04 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    63 6txc:C (2.84) BS04 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    64 6txc:D (2.84) BS05 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    65 6txc:E (2.84) BS02 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    66 6txc:F (2.84) BS03 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    67 6txc:G (2.84) BS05 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    68 6txc:H (2.84) BS05 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    69 6txc:I (2.84) BS03 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    70 6txc:J (2.84) BS03 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    71 6txc:K (2.84) BS05 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    72 6txc:L (2.84) BS07 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    73 6txc:M (2.84) BS03 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    74 6txc:N (2.84) BS03 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    75 6txc:O (2.84) BS04 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    76 6txc:P (2.84) BS07 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    77 6ui2:A (2.35) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 31683505
    78 6v5k:A (2.69) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    79 6w5x:A (2.59) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    80 6wk6:A (2.35) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 33258913
    81 6yom:A (3.25) BS03 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    82 6yom:B (3.25) BS06 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    83 7mz2:A (2.088) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    84 7mz8:A (2.6) BS05 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    85 8ujv:A (2.23) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    86 9ci9:A (2.09) BS03 0KX N/A N/A Q9Y253 39259676
    87 9cih:A (2.15) BS03 0KX N/A N/A Q9Y253 39259676
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218