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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3b1e:A (1.78) BS01 0JO 4.4.1.13 GO:0003824 ... A6BMJ3 22674431
    2 3b1e:B (1.78) BS01 0JO 4.4.1.13 GO:0003824 ... A6BMJ3 22674431
    3 3b1e:C (1.78) BS01 0JO 4.4.1.13 GO:0003824 ... A6BMJ3 22674431
    4 3b1e:D (1.78) BS01 0JO 4.4.1.13 GO:0003824 ... A6BMJ3 22674431
    5 4d9m:A (2.5) BS01 0JO 4.3.1.15 GO:0008838 ... P66899 22505717
    6 4d9m:B (2.5) BS01 0JO 4.3.1.15 GO:0008838 ... P66899 22505717
    7 4hn4:B (1.64) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 23952479
    8 4hpx:B (1.65) BS04 0JO 4.2.1.20 GO:0000162 ... P0A2K1 23952479
    9 4iy7:A (1.7) BS02 0JO 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    10 4iy7:B (1.7) BS02 0JO 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    11 4iyo:A (1.8) BS02 0JO 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    12 4iyo:B (1.8) BS02 0JO 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    13 5b3a:A (2.14) BS01 0JO 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 27377295
    14 5b3a:B (2.14) BS01 0JO 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 27377295
    15 5b55:A (2.14) BS02 0JO 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    16 5b55:B (2.14) BS02 0JO 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    17 5dbe:X (2.25) BS03 0JO 2.5.1.47 GO:0004124 ... P45040 N/A
    18 5dbh:X (1.98) BS01 0JO 2.5.1.47 GO:0004124 ... P45040 N/A
    19 5vm5:D (1.67) BS01 0JO 4.2.1.20 GO:0000162 ... Q8U093 29712420
    20 6am9:B (2.09) BS01 0JO 4.2.1.20 GO:0000162 ... Q8U093 29712420
    21 6am9:C (2.09) BS01 0JO 4.2.1.20 GO:0000162 ... Q8U093 29712420
    22 6am9:D (2.09) BS01 0JO 4.2.1.20 GO:0000162 ... Q8U093 29712420
    23 6d0v:B (1.64) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    24 6ld8:A (2.31) BS01 0JO ? GO:0003962 ... Q5H1U9 N/A
    25 6ld8:A (2.31) BS03 0JO ? GO:0003962 ... Q5H1U9 N/A
    26 6ld8:B (2.31) BS01 0JO ? GO:0003962 ... Q5H1U9 N/A
    27 6ld8:B (2.31) BS03 0JO ? GO:0003962 ... Q5H1U9 N/A
    28 6ld8:C (2.31) BS01 0JO ? GO:0003962 ... Q5H1U9 N/A
    29 6ld8:C (2.31) BS03 0JO ? GO:0003962 ... Q5H1U9 N/A
    30 6ld8:D (2.31) BS01 0JO ? GO:0003962 ... Q5H1U9 N/A
    31 6ld8:D (2.31) BS03 0JO ? GO:0003962 ... Q5H1U9 N/A
    32 6mls:A (1.77) BS03 0JO 4.1.99.2 GO:0006520 ... P31013 N/A
    33 6mme:A (1.9) BS02 0JO 4.1.99.2 GO:0006520 ... P31013 N/A
    34 6mme:B (1.9) BS02 0JO 4.1.99.2 GO:0006520 ... P31013 N/A
    35 6mo3:A (1.79) BS02 0JO 4.1.99.2 GO:0006520 ... P31013 N/A
    36 6mpd:A (1.79) BS03 0JO 4.1.99.2 GO:0006520 ... P31013 N/A
    37 6mqq:A (2.05) BS02 0JO 4.1.99.2 GO:0006520 ... P31013 N/A
    38 6mqq:B (2.05) BS01 0JO 4.1.99.2 GO:0006520 ... P31013 N/A
    39 6nv8:A (2.26) BS02 0JO 4.1.99.2 GO:0006520 ... P31013 N/A
    40 6vnt:B (1.25) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    41 6x0c:B (1.45) BS02 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    42 7ka1:B (1.6) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    43 7kq9:B (1.5) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    44 7kwv:B (1.3) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    45 7kxc:B (1.51) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    46 7kyt:B (1.35) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    47 7l03:B (1.6) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    48 7l1h:B (1.5) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    49 7lev:B (1.7) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    50 7lgx:B (1.8) BS03 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    51 7lt4:B (1.8) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    52 7mt4:B (1.4) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 34996869
    53 7mt5:B (1.5) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 34996869
    54 7mt6:B (1.7) BS01 0JO 4.2.1.20 GO:0000162 ... P0A2K1 34996869
    55 8egz:A (1.9) BS01 0JO 4.2.1.20 GO:0000162 ... P50909 38744987
    56 8egz:B (1.9) BS01 0JO 4.2.1.20 GO:0000162 ... P50909 38744987
    57 8eh0:A (1.7) BS01 0JO 4.2.1.20 GO:0000162 ... P50909 38744987
    58 8eh0:B (1.7) BS01 0JO 4.2.1.20 GO:0000162 ... P50909 38744987
    59 8eh1:A (2.0) BS01 0JO 4.2.1.20 GO:0000162 ... P50909 38744987
    60 8eh1:B (2.0) BS01 0JO 4.2.1.20 GO:0000162 ... P50909 38744987
    61 9bnj:A (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    62 9bnj:B (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    63 9bnj:C (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    64 9bnj:D (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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