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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4gkh:A (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273 PDBbind: -logKd/Ki=4.67, Ki=21.5uM
    2 4gkh:B (1.863) BS03 0J9 N/A GO:0005524 ... N/A 23758273
    3 4gkh:C (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    4 4gkh:D (1.863) BS01 0J9 N/A GO:0005524 ... N/A 23758273
    5 4gkh:E (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    6 4gkh:F (1.863) BS03 0J9 N/A GO:0005524 ... N/A 23758273
    7 4gkh:G (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    8 4gkh:H (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    9 4gkh:I (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    10 4gkh:J (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    11 4gkh:K (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    12 4gkh:L (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    13 4k11:A (2.3) BS01 0J9 2.7.10.2 GO:0004672 ... P12931 N/A BindingDB: IC50=1300nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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