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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fh0:A (1.6) BS01 0IW 3.4.22.43 GO:0006508 ... O60911 11027133
    2 1fh0:B (1.6) BS01 0IW 3.4.22.43 GO:0006508 ... O60911 11027133
    3 3s3r:A (2.64) BS01 0IW 3.4.22.1 GO:0006508 ... Q8MNY2 21832058 PDBbind: -logKd/Ki=8.68, IC50=2.09nM
    4 3s3r:A (2.64) BS02 0IW 3.4.22.1 GO:0006508 ... Q8MNY2 21832058 PDBbind: -logKd/Ki=8.68, IC50=2.09nM
    5 3s3r:B (2.64) BS01 0IW 3.4.22.1 GO:0006508 ... Q8MNY2 21832058
    6 3s3r:C (2.64) BS01 0IW 3.4.22.1 GO:0006508 ... Q8MNY2 21832058
    7 3s3r:C (2.64) BS02 0IW 3.4.22.1 GO:0006508 ... Q8MNY2 21832058
    8 8he9:A (1.55) BS01 0IW 3.4.22.1 GO:0006508 ... P07858 37990007
    9 8hfv:A (2.1) BS04 0IW 3.4.22.15 GO:0006508 ... P07711 37990007
    10 8hfv:B (2.1) BS04 0IW 3.4.22.15 GO:0006508 ... P07711 37990007
    11 8hfv:C (2.1) BS05 0IW 3.4.22.15 GO:0006508 ... P07711 37990007
    12 8hfv:D (2.1) BS05 0IW 3.4.22.15 GO:0006508 ... P07711 37990007
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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