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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3vbi:A (1.8) BS02 0FX N/A GO:0016740 ... N/A 22220494
    2 3vbi:A (1.8) BS04 0FX N/A GO:0016740 ... N/A 22220494
    3 3vbi:C (1.8) BS01 0FX N/A GO:0016740 ... N/A 22220494
    4 3vbi:C (1.8) BS03 0FX N/A GO:0016740 ... N/A 22220494
    5 3vbi:E (1.8) BS02 0FX N/A GO:0016740 ... N/A 22220494
    6 3vbi:E (1.8) BS04 0FX N/A GO:0016740 ... N/A 22220494
    7 3vbk:A (2.2) BS02 0FX N/A GO:0016740 ... N/A 22220494
    8 3vbk:A (2.2) BS04 0FX N/A GO:0016740 ... N/A 22220494
    9 3vbk:C (2.2) BS01 0FX N/A GO:0016740 ... N/A 22220494
    10 3vbk:C (2.2) BS03 0FX N/A GO:0016740 ... N/A 22220494
    11 3vbk:E (2.2) BS02 0FX N/A GO:0016740 ... N/A 22220494
    12 3vbk:E (2.2) BS04 0FX N/A GO:0016740 ... N/A 22220494
    13 3vbl:A (1.9) BS02 0FX N/A GO:0016740 ... N/A 22220494
    14 3vbl:A (1.9) BS04 0FX N/A GO:0016740 ... N/A 22220494
    15 3vbl:C (1.9) BS02 0FX N/A GO:0016740 ... N/A 22220494
    16 3vbl:C (1.9) BS04 0FX N/A GO:0016740 ... N/A 22220494
    17 3vbl:E (1.9) BS02 0FX N/A GO:0016740 ... N/A 22220494
    18 3vbl:E (1.9) BS04 0FX N/A GO:0016740 ... N/A 22220494
    19 4nv1:A (2.1) BS01 0FX ? GO:0004479 ... Q5NF01 24347283
    20 4nv1:C (2.1) BS01 0FX ? GO:0004479 ... Q5NF01 24347283
    21 4nv1:E (2.1) BS01 0FX ? GO:0004479 ... Q5NF01 24347283
    22 4nv1:G (2.1) BS01 0FX ? GO:0004479 ... Q5NF01 24347283
    23 4yfy:A (1.9) BS01 0FX ? GO:0004479 ... M9P0Q2 25752909
    24 4yfy:B (1.9) BS01 0FX ? GO:0004479 ... M9P0Q2 25752909
    25 5vyq:A (1.6) BS02 0FX 2.1.2.- GO:0004479 ... P9WKZ3 28665588
    26 6nbp:A (1.7) BS01 0FX ? GO:0004479 ... A0A4P1LYI6 30666752
    27 6v2t:A (1.9) BS01 0FX N/A GO:0009058 ... N/A 31867814
    28 6v2t:B (1.9) BS01 0FX N/A GO:0009058 ... N/A 31867814
    29 6v33:A (2.03) BS01 0FX ? GO:0004479 ... A0A0N8R1B2 31867814
    30 6v33:B (2.03) BS01 0FX ? GO:0004479 ... A0A0N8R1B2 31867814
    31 7txp:A (1.45) BS01 0FX ? GO:0016740 ... A0A334FGR6 35277885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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