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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3u8k:A (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    2 3u8k:A (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    3 3u8k:B (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    4 3u8k:B (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    5 3u8k:C (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    6 3u8k:C (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    7 3u8k:D (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    8 3u8k:D (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    9 3u8k:E (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    10 3u8k:E (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    11 3u8k:F (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    12 3u8k:F (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    13 3u8k:G (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    14 3u8k:G (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    15 3u8k:H (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    16 3u8k:H (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    17 3u8k:I (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    18 3u8k:I (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    19 3u8k:J (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    20 3u8k:J (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    21 3u8k:K (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    22 3u8k:K (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    23 3u8k:L (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    24 3u8k:L (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    25 3u8k:M (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    26 3u8k:M (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    27 3u8k:N (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    28 3u8k:N (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    29 3u8k:O (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    30 3u8k:O (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    31 3u8k:P (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    32 3u8k:P (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    33 3u8k:Q (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    34 3u8k:Q (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    35 3u8k:R (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    36 3u8k:R (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    37 3u8k:S (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    38 3u8k:S (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    39 3u8k:T (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    40 3u8k:T (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 BindingDB: Ki=2.2nM
    41 4um1:A (2.83) BS01 09P ? GO:0004888 ... P58154 26180047 PDBbind: -logKd/Ki=5.77, Ki=1700nM
    BindingDB: Ki=2.2nM
    42 4um1:A (2.83) BS02 09P ? GO:0004888 ... P58154 26180047 PDBbind: -logKd/Ki=5.77, Ki=1700nM
    BindingDB: Ki=2.2nM
    43 4um1:B (2.83) BS01 09P ? GO:0004888 ... P58154 26180047 PDBbind: -logKd/Ki=5.77, Ki=1700nM
    BindingDB: Ki=2.2nM
    44 4um1:B (2.83) BS02 09P ? GO:0004888 ... P58154 26180047 PDBbind: -logKd/Ki=5.77, Ki=1700nM
    BindingDB: Ki=2.2nM
    45 4um1:C (2.83) BS01 09P ? GO:0004888 ... P58154 26180047 BindingDB: Ki=2.2nM
    46 4um1:C (2.83) BS02 09P ? GO:0004888 ... P58154 26180047 BindingDB: Ki=2.2nM
    47 4um1:D (2.83) BS01 09P ? GO:0004888 ... P58154 26180047 BindingDB: Ki=2.2nM
    48 4um1:D (2.83) BS02 09P ? GO:0004888 ... P58154 26180047 BindingDB: Ki=2.2nM
    49 4um1:E (2.83) BS01 09P ? GO:0004888 ... P58154 26180047 BindingDB: Ki=2.2nM
    50 4um1:E (2.83) BS02 09P ? GO:0004888 ... P58154 26180047 BindingDB: Ki=2.2nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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