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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    713001 9bdn:AL18 (3.1) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    713002 9bdn:AL23 (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    713003 9bdn:AL26 (3.1) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    713004 9bdn:AL26 (3.1) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    713005 9bdn:AL27 (3.1) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    713006 9bdn:AL29 (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    713007 9bdn:AL33 (3.1) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    713008 9bdn:AL35 (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    713009 9bdn:AL35 (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    713010 9bdn:AL36 (3.1) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    713011 9bdn:AL38 (3.1) BS01 rna N/A GO:0003735 ... G1U001 38718836
    713012 9bdn:ARAC (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    713013 9bdn:AS03 (3.1) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    713014 9bdn:AS04 (3.1) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    713015 9bdn:AS05 (3.1) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    713016 9bdn:AS06 (3.1) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    713017 9bdn:AS07 (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    713018 9bdn:AS08 (3.1) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    713019 9bdn:AS08 (3.1) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    713020 9bdn:AS09 (3.1) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    713021 9bdn:AS16 (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    713022 9bdn:AS19 (3.1) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    713023 9bdn:AS23 (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    713024 9bdn:AS27 (3.1) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    713025 9bdn:AS28 (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    713026 9bdp:AL02 (3.7) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    713027 9bdp:AL02 (3.7) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    713028 9bdp:AL03 (3.7) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    713029 9bdp:AL05 (3.7) BS01 rna N/A GO:0000027 ... P19949 38718836
    713030 9bdp:AL05 (3.7) BS02 rna N/A GO:0000027 ... P19949 38718836
    713031 9bdp:AL07 (3.7) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    713032 9bdp:AL07 (3.7) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    713033 9bdp:AL09 (3.7) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    713034 9bdp:AL10 (3.7) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    713035 9bdp:AL10 (3.7) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    713036 9bdp:AL10 (3.7) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    713037 9bdp:AL12 (3.7) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    713038 9bdp:AL12 (3.7) BS02 rna N/A GO:0003723 ... G1SMR7 38718836
    713039 9bdp:AL15 (3.7) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    713040 9bdp:AL15 (3.7) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    713041 9bdp:AL16 (3.7) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    713042 9bdp:AL18 (3.7) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    713043 9bdp:AL23 (3.7) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    713044 9bdp:AL23 (3.7) BS02 rna N/A GO:0000122 ... G1T6D1 38718836
    713045 9bdp:AL26 (3.7) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    713046 9bdp:AL26 (3.7) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    713047 9bdp:AL27 (3.7) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    713048 9bdp:AL29 (3.7) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    713049 9bdp:AL33 (3.7) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    713050 9bdp:AL35 (3.7) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    713051 9bdp:AL35 (3.7) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    713052 9bdp:AL36 (3.7) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    713053 9bdp:AL38 (3.7) BS01 rna N/A GO:0003735 ... G1U001 38718836
    713054 9bdp:ARAC (3.7) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    713055 9bdp:AS03 (3.7) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    713056 9bdp:AS04 (3.7) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    713057 9bdp:AS05 (3.7) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    713058 9bdp:AS06 (3.7) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    713059 9bdp:AS07 (3.7) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    713060 9bdp:AS08 (3.7) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    713061 9bdp:AS08 (3.7) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    713062 9bdp:AS09 (3.7) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    713063 9bdp:AS16 (3.7) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    713064 9bdp:AS19 (3.7) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    713065 9bdp:AS23 (3.7) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    713066 9bdp:AS27 (3.7) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    713067 9bdp:AS28 (3.7) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    713068 9bdp:EF1A (3.7) BS01 rna N/A GO:0000329 ... P02994 38718836
    713069 9bdp:EF1A (3.7) BS02 rna N/A GO:0000329 ... P02994 38718836
    713070 9bdu:A (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    713071 9bdu:A (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    713072 9bdu:B (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    713073 9bdu:B (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    713074 9bdv:A (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    713075 9bdv:A (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    713076 9bdv:B (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    713077 9bdv:B (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    713078 9bdw:A (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    713079 9bdw:A (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    713080 9bdw:B (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    713081 9bdw:B (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    713082 9bdx:A (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    713083 9bdx:A (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    713084 9bdx:B (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    713085 9bdx:B (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    713086 9bfh:A (2.62) BS01 A1AN8 ? GO:0005515 ... P31224 37921493
    713087 9bfm:A (2.71) BS01 A1AON ? GO:0005515 ... P31224 37921493
    713088 9bfn:A (2.71) BS01 A1AOE ? GO:0005515 ... P31224 37921493
    713089 9bft:A (2.44) BS01 A1AOF ? GO:0005515 ... P31224 37921493
    713090 9bfy:C (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    713091 9bfy:D (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    713092 9bg1:C (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    713093 9bg1:D (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    713094 9bh8:A (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    713095 9bh8:B (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    713096 9bh9:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    713097 9bh9:A (3.5) BS02 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    713098 9bh9:B (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    713099 9bha:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    713100 9bha:B (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    713101 9bhr:A (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    713102 9bhr:B (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    713103 9bhs:A (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    713104 9bhs:B (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    713105 9bht:B (3.26) BS01 GDP N/A GO:0003924 ... F6V5P8 38960133
    713106 9bht:B (3.26) BS02 GTP N/A GO:0003924 ... F6V5P8 38960133
    713107 9bht:C (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    713108 9bht:C (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    713109 9bht:D (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    713110 9bht:D (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    713111 9bht:E (3.26) BS01 GTP N/A GO:0003924 ... F6V5P8 38960133
    713112 9bht:E (3.26) BS02 GDP N/A GO:0003924 ... F6V5P8 38960133
    713113 9bhw:A (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    713114 9bhw:A (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    713115 9bhw:B (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    713116 9bhw:B (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    713117 9bhw:C (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    713118 9bhw:C (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    713119 9bhw:D (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    713120 9bhw:D (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    713121 9bir:A (3.1) BS01 A1APP N/A GO:0005886 ... Q63424 N/A
    713122 9bis:A (3.2) BS01 AXL N/A GO:0005886 ... Q63424 N/A
    713123 9bit:A (3.1) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    713124 9biu:A (2.9) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    713125 9bjk:R (3.26) BS01 A1APV N/A GO:0001965 ... P42866 38961287
    713126 9bjk:R (3.26) BS02 A1APU N/A GO:0001965 ... P42866 38961287
    713127 9bk2:A (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    713128 9bk2:D (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    713129 9bk3:D (2.4) BS01 A1AR0 N/A GO:0004459 ... P00338 38925013
    713130 9bkj:R (2.59) BS01 peptide ? GO:0001764 ... P32238 39083706
    713131 9bkk:R (2.51) BS01 peptide ? GO:0001764 ... P32238 39083706
    713132 9bkl:A (1.7) BS01 CO ? GO:0009055 ... P24297 N/A
    713133 9bkm:A (2.08) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    713134 9bkm:A (2.08) BS02 A1AQM N/A GO:0004151 ... Q02127 38889244
    713135 9bkn:A (1.3) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    713136 9bkn:A (1.3) BS02 A1AQK N/A GO:0004151 ... Q02127 38889244
    713137 9bko:A (1.44) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    713138 9bko:A (1.44) BS02 A1AQL N/A GO:0004151 ... Q02127 38889244
    713139 9bkp:A (1.8) BS01 FE ? GO:0009055 ... P24297 N/A
    713140 9bkt:A (1.8) BS01 FE2 ? GO:0009055 ... P24297 N/A
    713141 9bkz:A (2.35) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    713142 9bkz:A (2.35) BS02 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    713143 9bkz:B (2.35) BS01 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    713144 9bkz:B (2.35) BS02 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    713145 9bn8:A (1.35) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    713146 9bn8:A (1.35) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    713147 9bn9:A (1.23) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    713148 9bn9:A (1.23) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    713149 9bn9:A (1.23) BS03 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    713150 9bnj:A (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    713151 9bnj:A (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    713152 9bnj:A (1.51) BS03 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    713153 9bnj:B (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    713154 9bnj:B (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    713155 9bnj:C (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    713156 9bnj:C (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    713157 9bnj:D (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    713158 9bnj:D (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    713159 9bnq:A (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    713160 9bnq:B (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    713161 9bnq:C (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    713162 9bnr:A (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    713163 9bnr:B (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    713164 9bnr:C (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    713165 9bp6:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    713166 9bp6:B (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    713167 9bp6:I (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    713168 9bp6:Q (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    713169 9brd:A (3.5) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    713170 9brd:a (3.5) BS01 BMA N/A GO:0000220 ... P25286 38900912
    713171 9brd:a (3.5) BS02 MAN N/A GO:0000220 ... P25286 38900912
    713172 9brd:a (3.5) BS03 GLC N/A GO:0000220 ... P25286 38900912
    713173 9brd:a (3.5) BS04 GLC N/A GO:0000220 ... P25286 38900912
    713174 9brd:a (3.5) BS05 WJP N/A GO:0000220 ... P25286 38900912
    713175 9brd:a (3.5) BS06 LP3 N/A GO:0000220 ... P25286 38900912
    713176 9brd:h (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    713177 9brd:i (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    713178 9brd:i (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    713179 9brd:i (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    713180 9brd:j (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    713181 9brd:j (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    713182 9brd:k (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    713183 9brd:k (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    713184 9brd:l (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    713185 9brd:l (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    713186 9brd:l (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    713187 9brd:m (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    713188 9brd:m (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    713189 9brd:m (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    713190 9brd:n (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    713191 9brd:n (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    713192 9brd:n (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    713193 9brd:n (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    713194 9brd:o (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    713195 9brd:o (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    713196 9brd:o (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    713197 9brd:o (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    713198 9c3d:A (1.85) BS01 ZN N/A GO:0008800 ... C6W709 N/A
    713199 9c3d:A (1.85) BS02 ZN N/A GO:0008800 ... C6W709 N/A
    713200 9c4o:A (1.99) BS01 CA N/A GO:0009279 ... P76115 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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