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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    712601 9ayj:A (3.2) BS06 Y01 ? GO:0005216 ... O95180 38605177
    712602 9ayj:A (3.2) BS07 JL3 ? GO:0005216 ... O95180 38605177
    712603 9ayj:A (3.2) BS08 JL3 ? GO:0005216 ... O95180 38605177
    712604 9ayj:A (3.2) BS09 JL3 ? GO:0005216 ... O95180 38605177
    712605 9ayj:A (3.2) BS10 Y01 ? GO:0005216 ... O95180 38605177
    712606 9ayj:A (3.2) BS11 Y01 ? GO:0005216 ... O95180 38605177
    712607 9ayk:A (3.0) BS01 A1AHJ ? GO:0005216 ... O95180 38605177
    712608 9ayk:A (3.0) BS02 CA ? GO:0005216 ... O95180 38605177
    712609 9ayk:A (3.0) BS03 LPE ? GO:0005216 ... O95180 38605177
    712610 9ayk:A (3.0) BS04 Y01 ? GO:0005216 ... O95180 38605177
    712611 9ayk:A (3.0) BS05 JL3 ? GO:0005216 ... O95180 38605177
    712612 9ayk:A (3.0) BS06 Y01 ? GO:0005216 ... O95180 38605177
    712613 9ayk:A (3.0) BS07 JL3 ? GO:0005216 ... O95180 38605177
    712614 9ayk:A (3.0) BS08 JL3 ? GO:0005216 ... O95180 38605177
    712615 9ayk:A (3.0) BS09 JL3 ? GO:0005216 ... O95180 38605177
    712616 9ayk:A (3.0) BS10 Y01 ? GO:0005216 ... O95180 38605177
    712617 9ayk:A (3.0) BS11 Y01 ? GO:0005216 ... O95180 38605177
    712618 9ayl:A (2.8) BS01 A1AHK ? GO:0005216 ... O95180 38605177
    712619 9ayl:A (2.8) BS02 CA ? GO:0005216 ... O95180 38605177
    712620 9ayl:A (2.8) BS03 LPE ? GO:0005216 ... O95180 38605177
    712621 9ayl:A (2.8) BS04 Y01 ? GO:0005216 ... O95180 38605177
    712622 9ayl:A (2.8) BS05 JL3 ? GO:0005216 ... O95180 38605177
    712623 9ayl:A (2.8) BS06 Y01 ? GO:0005216 ... O95180 38605177
    712624 9ayl:A (2.8) BS07 JL3 ? GO:0005216 ... O95180 38605177
    712625 9ayl:A (2.8) BS08 JL3 ? GO:0005216 ... O95180 38605177
    712626 9ayl:A (2.8) BS09 JL3 ? GO:0005216 ... O95180 38605177
    712627 9ayl:A (2.8) BS10 Y01 ? GO:0005216 ... O95180 38605177
    712628 9ayl:A (2.8) BS11 Y01 ? GO:0005216 ... O95180 38605177
    712629 9az4:A (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712630 9az4:B (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712631 9az4:C (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712632 9az4:D (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712633 9az4:E (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712634 9az4:F (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712635 9az7:A (2.0) BS01 CL ? GO:0006355 ... P16113 38595979
    712636 9azp:A (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712637 9azp:B (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712638 9azp:C (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712639 9azp:D (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712640 9azp:E (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712641 9azp:F (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712642 9azp:I (3.79) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38843827
    712643 9azq:A (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712644 9azq:B (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712645 9azq:C (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712646 9azq:C (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    712647 9azq:D (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712648 9azq:E (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712649 9azq:E (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    712650 9azq:F (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712651 9azq:I (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712652 9azq:I (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    712653 9b03:A (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712654 9b03:B (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712655 9b03:C (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712656 9b03:C (2.95) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    712657 9b03:D (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712658 9b03:E (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712659 9b03:F (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712660 9b0k:A (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712661 9b0k:B (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712662 9b0k:C (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712663 9b0k:C (3.03) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    712664 9b0k:D (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712665 9b0k:E (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712666 9b0k:F (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712667 9b20:A (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712668 9b20:A (1.55) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712669 9b20:A (1.55) BS03 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712670 9b20:B (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712671 9b20:B (1.55) BS02 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712672 9b20:B (1.55) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712673 9b20:B (1.55) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712674 9b21:A (1.6) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712675 9b21:A (1.6) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712676 9b21:A (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712677 9b21:A (1.6) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712678 9b21:B (1.6) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712679 9b21:B (1.6) BS02 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712680 9b21:B (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712681 9b21:B (1.6) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712682 9b22:A (1.3) BS01 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712683 9b22:A (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712684 9b22:A (1.3) BS03 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712685 9b22:A (1.3) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712686 9b22:A (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712687 9b22:B (1.3) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712688 9b22:B (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712689 9b22:B (1.3) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712690 9b22:B (1.3) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712691 9b22:B (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    712692 9b27:A (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712693 9b27:B (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712694 9b27:C (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712695 9b27:C (3.51) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    712696 9b27:D (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712697 9b27:E (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712698 9b27:F (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712699 9b2h:A (1.32) BS01 A1AIH N/A GO:0004190 ... Q5RZ08 38973505
    712700 9b2h:B (1.32) BS01 A1AIH N/A GO:0004190 ... Q5RZ08 38973505
    712701 9b33:E (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    712702 9b33:E (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    712703 9b33:F (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    712704 9b33:F (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    712705 9b36:E (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    712706 9b36:E (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    712707 9b36:E (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    712708 9b36:F (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    712709 9b36:F (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    712710 9b36:F (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    712711 9b36:G (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    712712 9b36:G (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    712713 9b36:G (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    712714 9b36:H (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    712715 9b36:H (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    712716 9b36:H (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    712717 9b37:E (6.66) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    712718 9b37:E (6.66) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    712719 9b37:F (6.66) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    712720 9b37:F (6.66) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    712721 9b37:F (6.66) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    712722 9b3d:A (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712723 9b3d:B (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712724 9b3d:C (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712725 9b3d:C (3.41) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    712726 9b3d:D (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712727 9b3d:E (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712728 9b3d:F (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    712729 9b3p:A (3.0) BS01 dna ? GO:0000775 ... P84243 38920622
    712730 9b3p:A (3.0) BS02 dna ? GO:0000775 ... P84243 38920622
    712731 9b3p:B (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    712732 9b3p:B (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    712733 9b3p:C (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    712734 9b3p:C (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    712735 9b3p:E (3.0) BS01 dna ? GO:0000775 ... P84243 38920622
    712736 9b3p:E (3.0) BS02 dna ? GO:0000775 ... P84243 38920622
    712737 9b3p:F (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    712738 9b3p:F (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    712739 9b3p:G (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    712740 9b3p:G (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    712741 9b3q:A (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    712742 9b3q:D (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    712743 9b3q:E (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    712744 9b3r:A (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    712745 9b3r:D (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    712746 9b3r:E (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    712747 9b56:A (3.35) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712748 9b58:A (3.39) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712749 9b5c:A (2.5) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712750 9b5c:A (2.5) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712751 9b5c:C (2.5) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712752 9b5d:A (2.8) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712753 9b5d:A (2.8) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712754 9b5d:C (2.8) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712755 9b5e:A (2.81) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712756 9b5e:A (2.81) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712757 9b5e:C (2.81) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712758 9b5f:A (2.78) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712759 9b5f:A (2.78) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712760 9b5f:C (2.78) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712761 9b5g:A (2.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712762 9b5g:A (2.67) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712763 9b5g:C (2.67) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712764 9b5h:A (2.69) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    712765 9b5h:A (2.69) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    712766 9b5h:A (2.69) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712767 9b5h:C (2.69) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712768 9b5i:A (2.7) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    712769 9b5i:A (2.7) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    712770 9b5i:A (2.7) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712771 9b5j:A (2.86) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    712772 9b5j:A (2.86) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712773 9b5k:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712774 9b5k:C (3.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712775 9b5l:A (3.3) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    712776 9b5l:A (3.3) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712777 9b5l:C (3.3) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712778 9b5m:A (2.79) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712779 9b5m:A (2.79) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712780 9b5m:C (2.79) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712781 9b5n:A (3.12) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712782 9b5n:A (3.12) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712783 9b5n:C (3.12) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712784 9b5o:A (3.19) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712785 9b5o:A (3.19) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712786 9b5o:C (3.19) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712787 9b5p:A (3.08) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712788 9b5p:A (3.08) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712789 9b5p:C (3.08) BS01 peptide 2.3.2.23 GO:0000151 ... P46595 39143218
    712790 9b5p:C (3.08) BS02 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712791 9b5q:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712792 9b5q:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712793 9b5q:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712794 9b5r:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712795 9b5r:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712796 9b5r:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    712797 9b5s:A (2.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712798 9b5s:A (2.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    712799 9b5t:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    712800 9b5t:A (3.16) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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