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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40601 1smy:C (2.7) BS16 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40602 1smy:C (2.7) BS17 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40603 1smy:C (2.7) BS18 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40604 1smy:C (2.7) BS19 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40605 1smy:C (2.7) BS20 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40606 1smy:C (2.7) BS21 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40607 1smy:C (2.7) BS22 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40608 1smy:C (2.7) BS23 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40609 1smy:C (2.7) BS24 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40610 1smy:C (2.7) BS25 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40611 1smy:C (2.7) BS26 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40612 1smy:C (2.7) BS27 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40613 1smy:C (2.7) BS28 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40614 1smy:C (2.7) BS29 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40615 1smy:C (2.7) BS30 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40616 1smy:C (2.7) BS31 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40617 1smy:C (2.7) BS32 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40618 1smy:C (2.7) BS33 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40619 1smy:C (2.7) BS34 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40620 1smy:C (2.7) BS35 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40621 1smy:C (2.7) BS36 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40622 1smy:D (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40623 1smy:D (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40624 1smy:D (2.7) BS03 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40625 1smy:D (2.7) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40626 1smy:D (2.7) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40627 1smy:D (2.7) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40628 1smy:D (2.7) BS07 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40629 1smy:D (2.7) BS08 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40630 1smy:D (2.7) BS09 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40631 1smy:D (2.7) BS10 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40632 1smy:D (2.7) BS11 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40633 1smy:D (2.7) BS12 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40634 1smy:D (2.7) BS13 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40635 1smy:D (2.7) BS14 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40636 1smy:D (2.7) BS15 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40637 1smy:D (2.7) BS16 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40638 1smy:D (2.7) BS17 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40639 1smy:D (2.7) BS18 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40640 1smy:D (2.7) BS19 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40641 1smy:D (2.7) BS20 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40642 1smy:D (2.7) BS21 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40643 1smy:D (2.7) BS22 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40644 1smy:D (2.7) BS23 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40645 1smy:D (2.7) BS24 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40646 1smy:D (2.7) BS25 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40647 1smy:D (2.7) BS26 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40648 1smy:D (2.7) BS27 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40649 1smy:D (2.7) BS28 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40650 1smy:D (2.7) BS29 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40651 1smy:D (2.7) BS30 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40652 1smy:D (2.7) BS31 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40653 1smy:D (2.7) BS32 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40654 1smy:D (2.7) BS33 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40655 1smy:D (2.7) BS34 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40656 1smy:D (2.7) BS35 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40657 1smy:D (2.7) BS36 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40658 1smy:D (2.7) BS37 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40659 1smy:D (2.7) BS38 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40660 1smy:D (2.7) BS39 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40661 1smy:D (2.7) BS40 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40662 1smy:D (2.7) BS41 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40663 1smy:D (2.7) BS42 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40664 1smy:D (2.7) BS43 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40665 1smy:D (2.7) BS44 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40666 1smy:D (2.7) BS45 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40667 1smy:D (2.7) BS46 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40668 1smy:D (2.7) BS47 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40669 1smy:D (2.7) BS48 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40670 1smy:D (2.7) BS49 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40671 1smy:D (2.7) BS50 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40672 1smy:D (2.7) BS51 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40673 1smy:D (2.7) BS52 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40674 1smy:D (2.7) BS53 G4P 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40675 1smy:E (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    40676 1smy:E (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    40677 1smy:E (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    40678 1smy:F (2.7) BS01 MG ? GO:0003677 ... Q72L95 15109491
    40679 1smy:F (2.7) BS02 MG ? GO:0003677 ... Q72L95 15109491
    40680 1smy:F (2.7) BS03 MG ? GO:0003677 ... Q72L95 15109491
    40681 1smy:F (2.7) BS04 MG ? GO:0003677 ... Q72L95 15109491
    40682 1smy:F (2.7) BS05 MG ? GO:0003677 ... Q72L95 15109491
    40683 1smy:F (2.7) BS06 MG ? GO:0003677 ... Q72L95 15109491
    40684 1smy:F (2.7) BS07 MG ? GO:0003677 ... Q72L95 15109491
    40685 1smy:F (2.7) BS08 MG ? GO:0003677 ... Q72L95 15109491
    40686 1smy:F (2.7) BS09 MG ? GO:0003677 ... Q72L95 15109491
    40687 1smy:F (2.7) BS10 MG ? GO:0003677 ... Q72L95 15109491
    40688 1smy:F (2.7) BS11 MG ? GO:0003677 ... Q72L95 15109491
    40689 1smy:F (2.7) BS12 MG ? GO:0003677 ... Q72L95 15109491
    40690 1smy:F (2.7) BS13 MG ? GO:0003677 ... Q72L95 15109491
    40691 1smy:F (2.7) BS14 MG ? GO:0003677 ... Q72L95 15109491
    40692 1smy:M (2.7) BS01 G4P 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40693 1smy:N (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40694 1smy:N (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40695 1smy:N (2.7) BS03 G4P 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    40696 1sn0:A (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    40697 1sn0:B (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    40698 1sn0:C (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    40699 1sn0:D (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    40700 1sn5:B (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    40701 1sn5:C (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    40702 1sn5:D (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    40703 1sn7:A (2.0) BS01 CA ? GO:0004252 ... Q8GB88 15014068
    40704 1snf:A (1.85) BS01 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40705 1snf:A (1.85) BS02 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40706 1snf:B (1.85) BS01 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40707 1snf:C (1.85) BS01 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40708 1snf:C (1.85) BS02 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40709 1snk:A (2.4) BS01 MYE 3.4.22.38 GO:0006508 ... P43235 15177446 PDBbind: -logKd/Ki=9.60, IC50=0.25nM
    BindingDB: IC50=0.250000nM
    40710 1snn:A (1.55) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 15213409
    40711 1snn:A (1.55) BS02 ZN 4.1.99.12 GO:0000287 ... Q60364 15213409
    40712 1snn:A (1.55) BS03 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    40713 1snn:A (1.55) BS04 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    40714 1snn:A (1.55) BS05 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    40715 1snn:B (1.55) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 15213409
    40716 1snn:B (1.55) BS02 ZN 4.1.99.12 GO:0000287 ... Q60364 15213409
    40717 1snr:A (1.31) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    40718 1snr:A (1.31) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40719 1snr:A (1.31) BS03 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    40720 1snr:A (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    40721 1snr:B (1.31) BS01 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    40722 1snr:B (1.31) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    40723 1snr:B (1.31) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40724 1snr:B (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    40725 1snr:C (1.31) BS01 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    40726 1snr:C (1.31) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    40727 1snr:C (1.31) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40728 1snr:C (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    40729 1snu:A (2.5) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749
    40730 1snu:B (2.5) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749
    40731 1so0:A (2.3) BS01 GAL 5.1.3.3 GO:0003824 ... Q96C23 15026423
    40732 1so0:B (2.3) BS01 GAL 5.1.3.3 GO:0003824 ... Q96C23 15026423
    40733 1so0:C (2.3) BS01 GAL 5.1.3.3 GO:0003824 ... Q96C23 15026423
    40734 1so0:D (2.3) BS01 GAL 5.1.3.3 GO:0003824 ... Q96C23 15026423
    40735 1so2:A (2.4) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40736 1so2:A (2.4) BS02 HG9 3.1.4.17 GO:0004114 ... Q13370 15147193
    40737 1so2:A (2.4) BS03 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    PDBbind: -logKd/Ki=9.57, IC50=0.27nM
    40738 1so2:B (2.4) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40739 1so2:B (2.4) BS02 HG9 3.1.4.17 GO:0004114 ... Q13370 15147193
    40740 1so2:B (2.4) BS03 HG9 3.1.4.17 GO:0004114 ... Q13370 15147193
    40741 1so2:B (2.4) BS04 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    40742 1so2:C (2.4) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40743 1so2:C (2.4) BS02 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    40744 1so2:D (2.4) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40745 1so2:D (2.4) BS02 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    40746 1so3:A (1.9) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    40747 1so3:A (1.9) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    40748 1so3:B (1.9) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    40749 1so3:B (1.9) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    40750 1so4:A (1.7) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    40751 1so4:A (1.7) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    40752 1so4:B (1.7) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    40753 1so4:B (1.7) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    40754 1so5:A (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    40755 1so5:A (1.8) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    40756 1so5:B (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    40757 1so5:B (1.8) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    40758 1so6:A (1.902) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    40759 1so6:A (1.902) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    40760 1so6:B (1.902) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    40761 1so6:B (1.902) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    40762 1sof:A (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40763 1sof:A (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40764 1sof:A (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    40765 1sof:B (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40766 1sof:B (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40767 1sof:B (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    40768 1sof:C (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40769 1sof:C (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40770 1sof:C (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    40771 1sof:D (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    40772 1sof:D (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40773 1sof:D (2.6) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40774 1sof:E (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40775 1sof:E (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40776 1sof:E (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    40777 1sof:F (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    40778 1sof:F (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40779 1sof:F (2.6) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40780 1sof:G (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40781 1sof:G (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40782 1sof:G (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    40783 1sof:H (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    40784 1sof:H (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40785 1sof:H (2.6) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    40786 1sog:A (1.85) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 15236591
    40787 1soj:A (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40788 1soj:B (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40789 1soj:C (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40790 1soj:D (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40791 1soj:E (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40792 1soj:F (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40793 1soj:G (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40794 1soj:H (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40795 1soj:I (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40796 1soj:J (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40797 1soj:K (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40798 1soj:L (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    40799 1som:A (2.2) BS01 VXA 3.1.1.7 GO:0001507 ... P04058 10353814
    40800 1son:A (2.55) BS01 AMP 6.3.4.4 GO:0000166 ... P0A7D4 8790347
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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