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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40401 1sjd:A (1.87) BS02 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    40402 1sjd:B (1.87) BS01 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    40403 1sjd:B (1.87) BS02 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    40404 1sjd:C (1.87) BS01 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    40405 1sjd:C (1.87) BS02 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    40406 1sjd:D (1.87) BS01 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    40407 1sjd:D (1.87) BS02 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    40408 1sje:A (2.45) BS01 peptide ? GO:0006955 ... P01903 15331779
    40409 1sje:B (2.45) BS01 peptide ? GO:0006955 ... P01911 15331779
    40410 1sjg:A (-1.00) BS01 FES ? GO:0009056 ... Q00458 15452777
    40411 1sjh:A (2.25) BS01 peptide ? GO:0006955 ... P01903 15331779
    40412 1sjh:B (2.25) BS01 peptide ? GO:0006955 ... P01911 15331779
    40413 1sjm:A (1.4) BS01 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40414 1sjm:A (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40415 1sjm:A (1.4) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    40416 1sjm:A (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    40417 1sjm:B (1.4) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    40418 1sjm:B (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40419 1sjm:B (1.4) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40420 1sjm:B (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    40421 1sjm:C (1.4) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    40422 1sjm:C (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40423 1sjm:C (1.4) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    40424 1sjm:C (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    40425 1sjn:A (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40426 1sjn:A (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40427 1sjn:B (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40428 1sjn:B (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40429 1sjn:C (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40430 1sjn:C (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40431 1sjn:C (1.8) BS03 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40432 1sjw:A (1.35) BS01 NGV 5.5.1.26 GO:0016853 ... Q9RN59 15071504
    40433 1sjz:A (1.8) BS01 TAS 1.20.4.1 GO:0008794 ... P08692 15295115
    40434 1sk0:A (1.8) BS01 TAS 1.20.4.1 GO:0008794 ... P08692 15295115
    40435 1sk4:A (1.65) BS01 NA ? GO:0008270 ... Q96LB9 15140887
    40436 1sk6:D (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    40437 1sk6:D (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    40438 1sk6:E (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    40439 1sk6:E (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    40440 1sk6:F (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    40441 1sk6:F (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    40442 1sk7:A (1.6) BS01 HEM 1.14.99.3 GO:0004392 ... O69002 15122889
    40443 1skg:A (1.21) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    40444 1skm:A (2.2) BS01 dna 2.1.1.37 GO:0003677 ... P05102 15273274
    40445 1skm:A (2.2) BS02 dna 2.1.1.37 GO:0003677 ... P05102 15273274
    40446 1skm:A (2.2) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 15273274
    40447 1skn:P (2.5) BS01 dna ? GO:0000978 ... P34707 9628487
    40448 1skn:P (2.5) BS02 dna ? GO:0000978 ... P34707 9628487
    40449 1skq:A (1.8) BS01 GDP ? GO:0003746 ... P35021 15157096
    40450 1skq:B (1.8) BS01 GDP ? GO:0003746 ... P35021 15157096
    40451 1skr:A (2.4) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40452 1skr:A (2.4) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40453 1skr:A (2.4) BS03 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40454 1skr:A (2.4) BS04 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40455 1skr:A (2.4) BS05 DAD 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40456 1sks:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40457 1sks:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40458 1sku:D (2.6) BS01 ZN 2.1.3.2 GO:0005515 ... P0A7F3 15014067
    40459 1skw:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40460 1skw:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40461 1skx:A (2.8) BS01 RFP ? GO:0003677 ... O75469 15705662 BindingDB: EC50=3500nM
    40462 1sl0:A (3.2) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40463 1sl0:A (3.2) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40464 1sl0:A (3.2) BS03 DAD 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40465 1sl0:C (3.2) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40466 1sl0:C (3.2) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40467 1sl1:A (2.2) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40468 1sl1:A (2.2) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40469 1sl2:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40470 1sl2:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40471 1sl2:A (2.3) BS03 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40472 1sl2:A (2.3) BS04 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40473 1sl2:A (2.3) BS05 DAD 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    40474 1sl3:A (1.81) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15163182
    40475 1sl3:A (1.81) BS02 170 3.4.21.5 GO:0004252 ... P00734 15163182 MOAD: Ki=1.4pM
    PDBbind: -logKd/Ki=11.85, Ki=1.4pM
    BindingDB: Ki=0.001400nM
    40476 1sl7:A (2.2) BS01 CA ? GO:0005509 ... Q27709 15689515
    40477 1sl7:A (2.2) BS02 CA ? GO:0005509 ... Q27709 15689515
    40478 1sl7:A (2.2) BS03 CA ? GO:0005509 ... Q27709 15689515
    40479 1sl8:A (1.7) BS01 CA ? GO:0005509 ... P07164 15689515
    40480 1sl8:A (1.7) BS02 CA ? GO:0005509 ... P07164 15689515
    40481 1sl8:A (1.7) BS03 CA ? GO:0005509 ... P07164 15689515
    40482 1sl9:A (1.17) BS01 CZH ? GO:0005509 ... Q27709 N/A
    40483 1sla:A (2.45) BS01 GAL ? GO:0005576 ... P11116 7773775
    40484 1slb:A (2.3) BS01 GAL ? GO:0005576 ... P11116 7773775
    40485 1slb:C (2.3) BS01 GAL ? GO:0005576 ... P11116 7773775
    40486 1slc:A (2.15) BS01 GAL ? GO:0005576 ... P11116 7773775
    40487 1slc:B (2.15) BS01 GAL ? GO:0005576 ... P11116 7773775
    40488 1sli:A (2.0) BS01 DAN 4.2.2.15 GO:0004308 ... Q27701 9562562
    40489 1slm:A (1.9) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    40490 1slm:A (1.9) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    40491 1slm:A (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    40492 1slm:A (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    40493 1sln:A (2.27) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    40494 1sln:A (2.27) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    40495 1sln:A (2.27) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    40496 1sln:A (2.27) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    40497 1sln:A (2.27) BS05 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    40498 1sln:A (2.27) BS06 8MI 3.4.24.17 GO:0004222 ... P08254 8535233
    40499 1slt:A (1.9) BS01 GAL ? GO:0005576 ... P11116 8108426
    40500 1slt:B (1.9) BS01 GAL ? GO:0005576 ... P11116 8108426
    40501 1slu:B (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    40502 1slv:B (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    40503 1slv:B (2.3) BS02 CU 3.4.21.4 GO:0004252 ... P00763 8634241
    40504 1slw:B (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    40505 1slx:B (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    40506 1slx:B (2.2) BS02 ZN 3.4.21.4 GO:0004252 ... P00763 8634241
    40507 1sly:A (2.8) BS01 BLG 4.2.2.n1 GO:0000270 ... P0AGC3 7548026
    40508 1sm1:1 (3.42) BS01 rna ? GO:0000049 ... Q9RSS4 15059283
    40509 1sm1:A (3.42) BS01 rna ? GO:0002181 ... Q9RXJ9 15059283
    40510 1sm1:B (3.42) BS01 rna ? GO:0003735 ... Q9RXK2 15059283
    40511 1sm1:C (3.42) BS01 rna ? GO:0003735 ... Q9RXK1 15059283
    40512 1sm1:G (3.42) BS01 rna ? GO:0003735 ... Q9RSS7 15059283
    40513 1sm1:H (3.42) BS01 rna ? GO:0003729 ... Q9RXY1 15059283
    40514 1sm1:I (3.42) BS01 rna ? GO:0003735 ... Q9RXJ2 15059283
    40515 1sm1:J (3.42) BS01 rna ? GO:0003735 ... Q9RSK9 15059283
    40516 1sm1:L (3.42) BS01 rna ? GO:0003735 ... Q9RSJ5 15059283
    40517 1sm1:O (3.42) BS01 rna ? GO:0000027 ... Q9RSW7 15059283
    40518 1sm1:P (3.42) BS01 rna ? GO:0003723 ... Q9RY64 15059283
    40519 1sm1:Q (3.42) BS01 rna ? GO:0003735 ... Q9RXJ7 15059283
    40520 1sm1:S (3.42) BS01 rna ? GO:0003723 ... Q9RXJ1 15059283
    40521 1sm1:T (3.42) BS01 rna ? GO:0000049 ... Q9RX88 15059283
    40522 1sm1:X (3.42) BS01 rna ? GO:0003735 ... Q9RSL0 15059283
    40523 1sm1:Y (3.42) BS01 rna ? GO:0000049 ... Q9RW44 15059283
    40524 1sm1:Z (3.42) BS01 rna ? GO:0003735 ... P49228 15059283
    40525 1sm2:A (2.3) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749 MOAD: Ki<10nM
    PDBbind: -logKd/Ki=8.00, Ki<10nM
    40526 1sm2:B (2.3) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749 MOAD: Ki<10nM
    40527 1sm3:L (1.95) BS01 peptide ? GO:0002250 ... P01723 9826510
    40528 1sm8:A (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40529 1sm8:A (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40530 1sm8:B (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40531 1sm8:B (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40532 1sm8:C (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40533 1sm8:C (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40534 1sm9:A (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    40535 1sm9:B (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    40536 1sm9:C (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    40537 1sm9:D (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    40538 1smc:A (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40539 1smc:A (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40540 1smc:B (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40541 1smc:B (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40542 1smc:C (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40543 1smc:C (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    40544 1smd:A (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    40545 1smd:A (1.6) BS02 CL 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    40546 1sme:A (2.7) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 8816746
    40547 1sme:B (2.7) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 8816746
    40548 1smf:E (2.1) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 7798176
    40549 1smf:E (2.1) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7798176
    40550 1smh:A (2.044) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 15196017
    40551 1smh:A (2.044) BS02 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    40552 1smh:A (2.044) BS03 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    40553 1smh:A (2.044) BS04 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    40554 1smh:A (2.044) BS05 MG8 2.7.11.11 GO:0001669 ... P00517 15196017
    40555 1sml:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 9811546
    40556 1sml:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 9811546
    40557 1smm:A (1.36) BS01 FE ? GO:0005506 ... P00268 15067525
    40558 1smp:A (2.3) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 7752231
    40559 1smp:A (2.3) BS02 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    40560 1smp:A (2.3) BS03 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    40561 1smp:A (2.3) BS04 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    40562 1smp:A (2.3) BS05 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    40563 1smp:A (2.3) BS06 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    40564 1smp:A (2.3) BS07 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    40565 1smp:A (2.3) BS08 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    40566 1smr:A (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    40567 1smr:C (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    40568 1smr:E (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    40569 1smr:G (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    40570 1smu:A (1.43) BS01 FE2 ? GO:0005506 ... P00268 15067525
    40571 1smw:A (1.38) BS01 FE2 ? GO:0005506 ... P00268 15067525
    40572 1smy:A (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40573 1smy:A (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40574 1smy:A (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40575 1smy:A (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40576 1smy:A (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40577 1smy:B (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40578 1smy:B (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40579 1smy:B (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40580 1smy:B (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40581 1smy:B (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40582 1smy:B (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40583 1smy:B (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40584 1smy:B (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40585 1smy:B (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    40586 1smy:C (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40587 1smy:C (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40588 1smy:C (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40589 1smy:C (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40590 1smy:C (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40591 1smy:C (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40592 1smy:C (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40593 1smy:C (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40594 1smy:C (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40595 1smy:C (2.7) BS10 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40596 1smy:C (2.7) BS11 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40597 1smy:C (2.7) BS12 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40598 1smy:C (2.7) BS13 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40599 1smy:C (2.7) BS14 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40600 1smy:C (2.7) BS15 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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