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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    34001 1prc:C (2.3) BS03 HEC ? GO:0005506 ... P07173 7877166
    34002 1prc:C (2.3) BS04 HEC ? GO:0005506 ... P07173 7877166
    34003 1prc:L (2.3) BS01 BCB ? GO:0009772 ... P06009 7877166
    34004 1prc:L (2.3) BS02 BCB ? GO:0009772 ... P06009 7877166
    34005 1prc:L (2.3) BS03 BPB ? GO:0009772 ... P06009 7877166
    34006 1prc:L (2.3) BS04 UQ1 ? GO:0009772 ... P06009 7877166
    34007 1prc:L (2.3) BS05 FE ? GO:0009772 ... P06009 7877166
    34008 1prc:L (2.3) BS06 BCB ? GO:0009772 ... P06009 7877166
    34009 1prc:L (2.3) BS07 BPB ? GO:0009772 ... P06009 7877166
    34010 1prc:L (2.3) BS08 MQ7 ? GO:0009772 ... P06009 7877166
    34011 1prc:M (2.3) BS01 BCB ? GO:0009772 ... P06010 7877166
    34012 1prc:M (2.3) BS02 BPB ? GO:0009772 ... P06010 7877166
    34013 1prc:M (2.3) BS03 FE ? GO:0009772 ... P06010 7877166
    34014 1prc:M (2.3) BS04 BCB ? GO:0009772 ... P06010 7877166
    34015 1prc:M (2.3) BS05 BCB ? GO:0009772 ... P06010 7877166
    34016 1prc:M (2.3) BS06 BPB ? GO:0009772 ... P06010 7877166
    34017 1prc:M (2.3) BS07 MQ7 ? GO:0009772 ... P06010 7877166
    34018 1prc:M (2.3) BS08 NS1 ? GO:0009772 ... P06010 7877166
    34019 1prh:A (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8121489
    34020 1prh:B (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8121489
    34021 1prl:C (-1.00) BS01 peptide 2.7.10.2 GO:0006897 ... P00523 7526465
    34022 1prm:C (-1.00) BS01 peptide 2.7.10.2 GO:0006897 ... P00523 7526465
    34023 1prn:A (1.96) BS01 C8E ? GO:0006811 ... P39767 7525973
    34024 1prn:A (1.96) BS02 C8E ? GO:0006811 ... P39767 7525973
    34025 1pro:A (1.8) BS01 A88 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12499 8558507 MOAD: Ki=5pM
    PDBbind: -logKd/Ki=11.30, Ki=5pM
    34026 1pro:B (1.8) BS01 A88 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12499 8558507 PDBbind: -logKd/Ki=11.30, Ki=5pM
    34027 1prr:A (-1.00) BS01 CA ? GO:0030435 ... P02966 8081742
    34028 1prr:A (-1.00) BS02 CA ? GO:0030435 ... P02966 8081742
    34029 1prs:A (-1.00) BS01 CA ? GO:0030435 ... P02966 8081742
    34030 1prs:A (-1.00) BS02 CA ? GO:0030435 ... P02966 8081742
    34031 1prw:A (1.7) BS01 CA ? GO:0000922 ... P62157 14527397
    34032 1prw:A (1.7) BS02 CA ? GO:0000922 ... P62157 14527397
    34033 1prw:A (1.7) BS03 CA ? GO:0000922 ... P62157 14527397
    34034 1prw:A (1.7) BS04 CA ? GO:0000922 ... P62157 14527397
    34035 1ps0:A (3.01) BS01 ZN 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    34036 1ps0:A (3.01) BS02 NAP 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    34037 1ps3:A (1.8) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 14636047
    34038 1ps3:A (1.8) BS02 KIF 3.2.1.114 GO:0000139 ... Q24451 14636047 MOAD: Ki=5.2mM
    PDBbind: -logKd/Ki=2.28, Ki=5.2mM
    34039 1ps6:A (2.25) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    34040 1ps6:A (2.25) BS02 4TP 1.1.1.262 GO:0000287 ... P19624 12896974
    34041 1ps6:B (2.25) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    34042 1ps7:A (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    34043 1ps7:B (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    34044 1ps7:C (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    34045 1ps7:D (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    34046 1ps9:A (2.2) BS01 SF4 1.3.1.34 GO:0005515 ... P42593 12840019
    34047 1ps9:A (2.2) BS02 FAD 1.3.1.34 GO:0005515 ... P42593 12840019
    34048 1ps9:A (2.2) BS03 FMN 1.3.1.34 GO:0005515 ... P42593 12840019
    34049 1ps9:A (2.2) BS04 NAP 1.3.1.34 GO:0005515 ... P42593 12840019
    34050 1ps9:A (2.2) BS05 MDE 1.3.1.34 GO:0005515 ... P42593 12840019
    34051 1psa:A (2.9) BS01 0ZL 3.4.23.1 GO:0004190 ... P00791 1418819
    34052 1psa:B (2.9) BS01 0ZL 3.4.23.1 GO:0004190 ... P00791 1418819
    34053 1psb:A (-1.00) BS01 peptide ? GO:0005509 ... P02638 14661952
    34054 1psb:B (-1.00) BS01 peptide ? GO:0005509 ... P02638 14661952
    34055 1psc:A (2.0) BS01 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    34056 1psc:A (2.0) BS02 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    34057 1psc:B (2.0) BS01 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    34058 1psc:B (2.0) BS02 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    34059 1psd:A (2.75) BS01 NAD 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    34060 1psd:A (2.75) BS02 SER 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    34061 1psd:B (2.75) BS01 NAD 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    34062 1psd:B (2.75) BS02 SER 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    34063 1psh:A (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    34064 1psh:B (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    34065 1psh:C (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    34066 1psj:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14418 8636969
    34067 1pso:E (2.0) BS01 peptide 3.4.23.1 GO:0004190 ... P0DJD7 7663352
    34068 1pss:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 8161514
    34069 1pss:L (3.0) BS02 BPH ? GO:0009772 ... P0C0Y8 8161514
    34070 1pss:L (3.0) BS03 U10 ? GO:0009772 ... P0C0Y8 8161514
    34071 1pss:L (3.0) BS04 FE ? GO:0009772 ... P0C0Y8 8161514
    34072 1pss:L (3.0) BS05 BCL ? GO:0009772 ... P0C0Y8 8161514
    34073 1pss:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 8161514
    34074 1pss:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 8161514
    34075 1pss:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 8161514
    34076 1pss:M (3.0) BS01 BPH ? GO:0009772 ... P0C0Y9 8161514
    34077 1pss:M (3.0) BS02 FE ? GO:0009772 ... P0C0Y9 8161514
    34078 1pss:M (3.0) BS03 BCL ? GO:0009772 ... P0C0Y9 8161514
    34079 1pss:M (3.0) BS04 BCL ? GO:0009772 ... P0C0Y9 8161514
    34080 1pss:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 8161514
    34081 1pss:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 8161514
    34082 1pss:M (3.0) BS07 U10 ? GO:0009772 ... P0C0Y9 8161514
    34083 1pss:M (3.0) BS08 CRT ? GO:0009772 ... P0C0Y9 8161514
    34084 1pst:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 8161514
    34085 1pst:L (3.0) BS02 BCL ? GO:0009772 ... P0C0Y8 8161514
    34086 1pst:L (3.0) BS03 BPH ? GO:0009772 ... P0C0Y8 8161514
    34087 1pst:L (3.0) BS04 U10 ? GO:0009772 ... P0C0Y8 8161514
    34088 1pst:L (3.0) BS05 FE ? GO:0009772 ... P0C0Y8 8161514
    34089 1pst:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 8161514
    34090 1pst:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 8161514
    34091 1pst:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 8161514
    34092 1pst:M (3.0) BS01 BCL ? GO:0009772 ... P0C0Y9 8161514
    34093 1pst:M (3.0) BS02 BPH ? GO:0009772 ... P0C0Y9 8161514
    34094 1pst:M (3.0) BS03 U10 ? GO:0009772 ... P0C0Y9 8161514
    34095 1pst:M (3.0) BS04 FE ? GO:0009772 ... P0C0Y9 8161514
    34096 1pst:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 8161514
    34097 1pst:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 8161514
    34098 1pst:M (3.0) BS07 BPH ? GO:0009772 ... P0C0Y9 8161514
    34099 1pst:M (3.0) BS08 U10 ? GO:0009772 ... P0C0Y9 8161514
    34100 1pst:M (3.0) BS09 CRT ? GO:0009772 ... P0C0Y9 8161514
    34101 1psz:A (2.0) BS01 ZN ? GO:0007155 ... P0A4G2 9862808
    34102 1pt2:A (2.1) BS01 GLC 2.4.1.10 GO:0005576 ... P05655 14517548
    34103 1pt2:A (2.1) BS02 FRU 2.4.1.10 GO:0005576 ... P05655 14517548
    34104 1pt2:A (2.1) BS03 CA 2.4.1.10 GO:0005576 ... P05655 14517548
    34105 1pt3:A (2.5) BS01 dna 3.1.-.- GO:0004519 ... Q47112 14962381
    34106 1pt3:A (2.5) BS02 dna 3.1.-.- GO:0004519 ... Q47112 14962381
    34107 1pt3:B (2.5) BS01 dna 3.1.-.- GO:0004519 ... Q47112 14962381
    34108 1pt3:B (2.5) BS02 dna 3.1.-.- GO:0004519 ... Q47112 14962381
    34109 1pt5:A (2.0) BS01 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    34110 1pt5:B (2.0) BS01 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    34111 1pt5:B (2.0) BS02 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    34112 1pt8:A (2.2) BS01 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    34113 1pt8:A (2.2) BS02 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    34114 1pt8:B (2.2) BS01 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    34115 1ptg:A (2.6) BS01 INS 4.6.1.13 GO:0004436 ... P14262 7664726
    34116 1pth:A (3.4) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 7552725
    34117 1pth:A (3.4) BS02 SAL 1.14.99.1 GO:0001516 ... P05979 7552725
    34118 1pth:B (3.4) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 7552725
    34119 1pth:B (3.4) BS02 SAL 1.14.99.1 GO:0001516 ... P05979 7552725
    34120 1ptj:A (2.61) BS01 SND 7.1.1.1 GO:0000166 ... Q2RSB2 12791694
    34121 1ptk:A (2.4) BS01 HG 3.4.21.64 GO:0004252 ... P06873 8253733
    34122 1ptk:A (2.4) BS02 CA 3.4.21.64 GO:0004252 ... P06873 8253733
    34123 1ptm:A (1.96) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    34124 1ptm:A (1.96) BS02 PO4 1.1.1.262 GO:0000287 ... P19624 12896974
    34125 1ptm:B (1.96) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    34126 1pto:B (3.5) BS01 SIA ? GO:0005576 ... P04978 7634099
    34127 1pto:C (3.5) BS01 SIA ? GO:0005576 ... P04979 7634099
    34128 1pto:I (3.5) BS01 SIA ? GO:0005576 ... P04979 7634099
    34129 1ptt:A (2.9) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 7540771
    34130 1ptu:A (2.6) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 7540771
    34131 1ptv:A (2.3) BS01 PTR 3.1.3.48 GO:0004725 ... P18031 7540771
    34132 1ptw:A (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    34133 1ptw:A (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    34134 1ptw:B (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    34135 1ptw:B (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    34136 1ptw:C (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    34137 1ptw:C (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    34138 1ptw:D (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    34139 1ptw:D (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    34140 1pty:A (1.85) BS01 PTR 3.1.3.48 GO:0004725 ... P18031 9391040
    34141 1pty:A (1.85) BS02 PTR 3.1.3.48 GO:0004725 ... P18031 9391040
    34142 1ptz:A (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34143 1ptz:A (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34144 1ptz:B (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34145 1ptz:B (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34146 1pu0:A (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34147 1pu0:A (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34148 1pu0:B (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34149 1pu0:B (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34150 1pu0:C (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34151 1pu0:C (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34152 1pu0:D (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34153 1pu0:D (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34154 1pu0:E (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34155 1pu0:E (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34156 1pu0:F (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34157 1pu0:F (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34158 1pu0:G (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34159 1pu0:G (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34160 1pu0:H (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34161 1pu0:H (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34162 1pu0:I (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34163 1pu0:I (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34164 1pu0:J (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    34165 1pu0:J (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    34166 1pu4:A (3.2) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 16046623
    34167 1pu4:A (3.2) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    34168 1pu4:A (3.2) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    34169 1pu4:B (3.2) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 16046623
    34170 1pu4:B (3.2) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    34171 1pu4:B (3.2) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    34172 1pu7:A (1.93) BS01 39A ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    34173 1pu7:B (1.93) BS01 39A ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    34174 1pu8:A (2.13) BS01 EA1 ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    34175 1pu8:B (2.13) BS01 EA1 ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    34176 1pud:A (1.85) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 8654383
    34177 1pue:E (2.1) BS01 dna ? GO:0003700 ... P17433 8602247
    34178 1pue:E (2.1) BS02 dna ? GO:0003700 ... P17433 8602247
    34179 1pue:F (2.1) BS01 dna ? GO:0003700 ... P17433 8602247
    34180 1pue:F (2.1) BS02 dna ? GO:0003700 ... P17433 8602247
    34181 1puf:A (1.9) BS01 dna ? GO:0000981 ... P09631 12923056 PDBbind: Kd=0.23uM
    34182 1puf:A (1.9) BS02 dna ? GO:0000981 ... P09631 12923056 PDBbind: Kd=0.23uM
    34183 1puf:B (1.9) BS01 dna ? GO:0000981 ... P40424 12923056 PDBbind: Kd=0.23uM
    34184 1puf:B (1.9) BS02 dna ? GO:0000981 ... P40424 12923056 PDBbind: Kd=0.23uM
    34185 1puj:A (2.0) BS01 GNP ? GO:0003723 ... O31743 N/A
    34186 1pun:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    34187 1pun:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    34188 1puq:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    34189 1puq:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    34190 1pus:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    34191 1pus:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    34192 1put:A (-1.00) BS01 FES ? GO:0005515 ... P00259 8204575
    34193 1pv4:A (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    34194 1pv4:C (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    34195 1pv4:D (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    34196 1pv4:E (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    34197 1pv4:F (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    34198 1pv8:A (2.2) BS01 PB1 4.2.1.24 GO:0001666 ... P13716 12897770
    34199 1pv9:A (2.0) BS01 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    34200 1pv9:A (2.0) BS02 ZN 3.4.13.9 GO:0005737 ... P81535 15005612

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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