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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22801 1kqo:E (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    22802 1kqo:F (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    22803 1kqp:A (1.03) BS01 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    22804 1kqp:A (1.03) BS02 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    22805 1kqp:A (1.03) BS03 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    22806 1kqp:A (1.03) BS04 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    22807 1kqp:B (1.03) BS01 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    22808 1kqp:B (1.03) BS02 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    22809 1kqp:B (1.03) BS03 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    22810 1kqp:B (1.03) BS04 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    22811 1kqq:A (-1.00) BS01 dna ? GO:0003677 ... Q24573 11867548 PDBbind: Kd=28nM
    22812 1kqq:A (-1.00) BS02 dna ? GO:0003677 ... Q24573 11867548 PDBbind: Kd=28nM
    22813 1kqr:A (1.4) BS01 MNA ? GO:0019028 ... P12473 11867517
    22814 1kqs:1 (3.1) BS01 rna ? GO:0003735 ... P22452 11828326
    22815 1kqs:2 (3.1) BS01 rna ? GO:0000049 ... P32411 11828326
    22816 1kqs:2 (3.1) BS02 MG ? GO:0000049 ... P32411 11828326
    22817 1kqs:A (3.1) BS01 rna ? GO:0002181 ... P20276 11828326
    22818 1kqs:B (3.1) BS01 rna ? GO:0003723 ... P20279 11828326
    22819 1kqs:C (3.1) BS01 rna ? GO:0003723 ... P12735 11828326
    22820 1kqs:D (3.1) BS01 rna ? GO:0000049 ... P14124 11828326
    22821 1kqs:D (3.1) BS02 rna ? GO:0000049 ... P14124 11828326
    22822 1kqs:E (3.1) BS01 rna ? GO:0002181 ... P14135 11828326
    22823 1kqs:F (3.1) BS01 rna ? GO:0001682 ... P12743 11828326
    22824 1kqs:H (3.1) BS01 rna ? GO:0000027 ... P60617 11828326
    22825 1kqs:I (3.1) BS01 rna ? GO:0003729 ... P29198 11828326
    22826 1kqs:J (3.1) BS01 rna ? GO:0003735 ... P22450 11828326
    22827 1kqs:K (3.1) BS01 rna ? GO:0003735 ... P12737 11828326
    22828 1kqs:L (3.1) BS01 rna ? GO:0002181 ... P60618 11828326
    22829 1kqs:M (3.1) BS01 rna ? GO:0000027 ... P14123 11828326
    22830 1kqs:M (3.1) BS02 rna ? GO:0000027 ... P14123 11828326
    22831 1kqs:N (3.1) BS01 rna ? GO:0003723 ... P12733 11828326
    22832 1kqs:O (3.1) BS01 rna ? GO:0003723 ... P14119 11828326
    22833 1kqs:P (3.1) BS01 rna ? GO:0003735 ... P12734 11828326
    22834 1kqs:P (3.1) BS02 rna ? GO:0003735 ... P12734 11828326
    22835 1kqs:Q (3.1) BS01 rna ? GO:0002181 ... P10970 11828326
    22836 1kqs:R (3.1) BS01 rna ? GO:0000027 ... P12732 11828326
    22837 1kqs:S (3.1) BS01 rna ? GO:0002181 ... P10972 11828326
    22838 1kqs:S (3.1) BS02 MG ? GO:0002181 ... P10972 11828326
    22839 1kqs:T (3.1) BS01 rna ? GO:0003735 ... P14116 11828326
    22840 1kqs:U (3.1) BS01 rna ? GO:0003735 ... P10971 11828326
    22841 1kqs:V (3.1) BS01 rna ? GO:0000463 ... P14121 11828326
    22842 1kqs:V (3.1) BS02 rna ? GO:0000463 ... P14121 11828326
    22843 1kqs:W (3.1) BS01 rna ? GO:0002181 ... P18138 11828326
    22844 1kqs:X (3.1) BS01 rna ? GO:0000166 ... P12736 11828326
    22845 1kqs:X (3.1) BS02 MG ? GO:0000166 ... P12736 11828326
    22846 1kqs:Y (3.1) BS01 rna ? GO:0003735 ... P60619 11828326
    22847 1kqs:Z (3.1) BS01 rna ? GO:0003723 ... P32410 11828326
    22848 1kqu:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    22849 1kqu:A (2.1) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    22850 1kqu:A (2.1) BS03 BR4 3.1.1.4 GO:0004623 ... P14555 12616631
    22851 1kqw:A (1.38) BS01 RTL ? GO:0005504 ... Q8UVG6 12162964
    22852 1kr2:A (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    22853 1kr2:B (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    22854 1kr2:C (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    22855 1kr2:D (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    22856 1kr2:E (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    22857 1kr2:F (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    22858 1kr3:A (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    22859 1kr3:A (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    22860 1kr3:A (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    22861 1kr3:B (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    22862 1kr3:B (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    22863 1kr3:B (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    22864 1kr5:A (2.1) BS01 SAH 2.1.1.77 GO:0004719 ... P22061 11792715
    22865 1kr6:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22866 1kr6:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22867 1kr6:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22868 1kr6:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22869 1kr6:A (1.8) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    22870 1kr6:A (1.8) BS06 DGL 3.4.24.27 GO:0004222 ... P00800 N/A
    22871 1kr7:A (1.5) BS01 HEM ? GO:0005344 ... O76242 12015154
    22872 1kr7:A (1.5) BS02 OXY ? GO:0005344 ... O76242 12015154
    22873 1krb:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    22874 1krb:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    22875 1krc:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    22876 1krc:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    22877 1kre:A (2.2) BS01 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    22878 1kre:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    22879 1kre:B (2.2) BS02 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    22880 1krf:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    22881 1krf:A (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    22882 1krf:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    22883 1krf:B (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    22884 1krh:A (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    22885 1krh:A (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    22886 1krh:B (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    22887 1krh:B (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    22888 1krj:A (2.0) BS01 K 1.11.1.5 GO:0004601 ... P00431 10608846
    22889 1krj:A (2.0) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 10608846
    22890 1krm:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 12554940
    22891 1krm:A (2.5) BS02 PRH 3.5.4.4 GO:0004000 ... P56658 12554940
    22892 1kro:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22893 1kro:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22894 1kro:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22895 1kro:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22896 1kro:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    22897 1kro:A (1.7) BS06 DTH 3.4.24.27 GO:0004222 ... P00800 N/A
    22898 1krp:A (2.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    22899 1krp:A (2.2) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    22900 1krp:A (2.2) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    22901 1krr:A (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    22902 1krr:A (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    22903 1krr:B (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    22904 1krr:B (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    22905 1krr:C (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    22906 1krr:C (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    22907 1kru:A (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22908 1kru:A (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22909 1kru:A (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22910 1kru:A (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22911 1kru:A (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22912 1kru:A (2.8) BS06 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22913 1kru:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22914 1kru:B (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22915 1kru:B (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22916 1kru:B (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22917 1kru:B (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22918 1kru:C (2.8) BS01 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22919 1kru:C (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22920 1kru:C (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22921 1kru:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22922 1kru:C (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    22923 1krv:A (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    22924 1krv:A (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22925 1krv:A (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    22926 1krv:A (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22927 1krv:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22928 1krv:B (2.8) BS02 147 2.3.1.18 GO:0005737 ... P07464 11937062
    22929 1krv:B (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22930 1krv:B (2.8) BS04 147 2.3.1.18 GO:0005737 ... P07464 11937062
    22931 1krv:C (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    22932 1krv:C (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22933 1krv:C (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    22934 1krv:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    22935 1krx:A (-1.00) BS01 BEF ? GO:0000160 ... P41789 12885241
    22936 1ks4:A (2.5) BS01 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    22937 1ks4:A (2.5) BS02 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    22938 1ks4:A (2.5) BS03 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    22939 1ks7:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22940 1ks7:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22941 1ks7:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22942 1ks7:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    22943 1ks7:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    22944 1ks7:A (1.7) BS06 DAS 3.4.24.27 GO:0004222 ... P00800 N/A
    22945 1ksc:A (1.55) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    22946 1ksd:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    22947 1ksf:X (2.6) BS01 MG ? GO:0004176 ... P0ABH9 12205096
    22948 1ksf:X (2.6) BS02 ADP ? GO:0004176 ... P0ABH9 12205096
    22949 1ksf:X (2.6) BS03 ADP ? GO:0004176 ... P0ABH9 12205096
    22950 1ksg:A (2.3) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    22951 1ksg:A (2.3) BS02 GTP ? GO:0003924 ... Q9D0J4 11980706
    22952 1ksh:A (1.8) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    22953 1ksh:A (1.8) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    22954 1ksi:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    22955 1ksi:A (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    22956 1ksi:B (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    22957 1ksi:B (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    22958 1ksj:A (2.6) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    22959 1ksj:A (2.6) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    22960 1ksj:A (2.6) BS03 GTP ? GO:0003924 ... Q9D0J4 11980706
    22961 1ksk:A (2.0) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    22962 1ksl:A (2.1) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    22963 1ksn:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12039587
    22964 1ksn:A (2.1) BS02 FXV 3.4.21.6 GO:0004252 ... P00742 12039587 MOAD: Ki=0.4nM
    PDBbind: -logKd/Ki=9.40, Ki=0.4nM
    22965 1ksp:A (2.3) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    22966 1ksp:A (2.3) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    22967 1ksp:A (2.3) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    22968 1kss:A (1.8) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    22969 1kss:A (1.8) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22970 1kss:A (1.8) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22971 1kss:A (1.8) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22972 1kss:A (1.8) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22973 1kss:A (1.8) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    22974 1kss:A (1.8) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22975 1ksu:A (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    22976 1ksu:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22977 1ksu:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22978 1ksu:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22979 1ksu:A (2.0) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22980 1ksu:A (2.0) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    22981 1ksu:A (2.0) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22982 1ksu:B (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    22983 1ksu:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22984 1ksu:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22985 1ksu:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22986 1ksu:B (2.0) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22987 1ksu:B (2.0) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    22988 1ksu:B (2.0) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22989 1ksv:A (2.65) BS01 U 5.4.99.19 GO:0000455 ... P0AA43 11953756
    22990 1ksw:A (2.8) BS01 NBS 2.7.10.2 GO:0004672 ... P12931 11841936
    22991 1ksz:A (2.8) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9182542
    22992 1ksz:A (2.8) BS02 GDP 6.3.4.4 GO:0000166 ... P0A7D4 9182542
    22993 1ksz:A (2.8) BS03 HDA 6.3.4.4 GO:0000166 ... P0A7D4 9182542
    22994 1ksz:A (2.8) BS04 PGS 6.3.4.4 GO:0000166 ... P0A7D4 9182542
    22995 1kt3:A (1.4) BS01 RTL ? GO:0005501 ... P18902 12787682
    22996 1kt4:A (1.461) BS01 RTL ? GO:0005501 ... P18902 12787682
    22997 1kt5:A (1.46) BS01 RTL ? GO:0005501 ... P18902 12787682
    22998 1kt6:A (1.1) BS01 RTL ? GO:0005501 ... P18902 12787682
    22999 1kt7:A (1.274) BS01 RTL ? GO:0005501 ... P18902 12787682
    23000 1kt8:A (1.9) BS01 ILP 2.6.1.42 GO:0003824 ... O15382 12269802
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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