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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    20801 1jyv:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20802 1jyv:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20803 1jyv:C (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    20804 1jyv:C (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    20805 1jyv:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20806 1jyv:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20807 1jyv:D (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    20808 1jyv:D (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    20809 1jyw:A (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    20810 1jyw:A (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20811 1jyw:A (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20812 1jyw:B (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    20813 1jyw:B (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20814 1jyw:B (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20815 1jyw:C (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    20816 1jyw:C (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20817 1jyw:C (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20818 1jyw:D (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    20819 1jyw:D (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20820 1jyw:D (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20821 1jyx:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20822 1jyx:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20823 1jyx:A (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20824 1jyx:A (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20825 1jyx:A (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20826 1jyx:A (1.75) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    20827 1jyx:A (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    20828 1jyx:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20829 1jyx:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20830 1jyx:B (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20831 1jyx:B (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20832 1jyx:B (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20833 1jyx:B (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20834 1jyx:B (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    20835 1jyx:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20836 1jyx:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20837 1jyx:C (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20838 1jyx:C (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20839 1jyx:C (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20840 1jyx:C (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20841 1jyx:C (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    20842 1jyx:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20843 1jyx:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20844 1jyx:D (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20845 1jyx:D (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20846 1jyx:D (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20847 1jyx:D (1.75) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    20848 1jyx:D (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    20849 1jz2:A (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    20850 1jz2:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20851 1jz2:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20852 1jz2:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20853 1jz2:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20854 1jz2:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20855 1jz2:B (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    20856 1jz2:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20857 1jz2:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20858 1jz2:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20859 1jz2:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20860 1jz2:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20861 1jz2:C (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    20862 1jz2:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20863 1jz2:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20864 1jz2:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20865 1jz2:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20866 1jz2:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20867 1jz2:D (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    20868 1jz2:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20869 1jz2:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20870 1jz2:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20871 1jz2:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20872 1jz2:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20873 1jz3:A (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    20874 1jz3:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20875 1jz3:A (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20876 1jz3:B (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    20877 1jz3:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20878 1jz3:B (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20879 1jz3:C (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    20880 1jz3:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20881 1jz3:C (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20882 1jz3:D (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    20883 1jz3:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20884 1jz3:D (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20885 1jz4:A (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    20886 1jz4:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20887 1jz4:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20888 1jz4:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20889 1jz4:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20890 1jz4:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20891 1jz4:A (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20892 1jz4:B (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    20893 1jz4:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20894 1jz4:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20895 1jz4:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20896 1jz4:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20897 1jz4:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20898 1jz4:B (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20899 1jz4:C (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    20900 1jz4:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20901 1jz4:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20902 1jz4:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20903 1jz4:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20904 1jz4:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20905 1jz4:C (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20906 1jz4:D (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    20907 1jz4:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20908 1jz4:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20909 1jz4:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20910 1jz4:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20911 1jz4:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20912 1jz5:A (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    20913 1jz5:A (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20914 1jz5:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20915 1jz5:B (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    20916 1jz5:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20917 1jz5:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20918 1jz5:C (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    20919 1jz5:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20920 1jz5:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20921 1jz5:D (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    20922 1jz5:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20923 1jz5:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20924 1jz6:A (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    20925 1jz6:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20926 1jz6:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20927 1jz6:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20928 1jz6:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20929 1jz6:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20930 1jz6:A (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20931 1jz6:B (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    20932 1jz6:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20933 1jz6:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20934 1jz6:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20935 1jz6:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20936 1jz6:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20937 1jz6:B (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20938 1jz6:C (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    20939 1jz6:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20940 1jz6:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20941 1jz6:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20942 1jz6:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20943 1jz6:C (2.1) BS06 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20944 1jz6:D (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    20945 1jz6:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20946 1jz6:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20947 1jz6:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20948 1jz6:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20949 1jz6:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20950 1jz7:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    20951 1jz7:A (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    20952 1jz7:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20953 1jz7:A (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20954 1jz7:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    20955 1jz7:B (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    20956 1jz7:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20957 1jz7:B (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20958 1jz7:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    20959 1jz7:C (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    20960 1jz7:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20961 1jz7:C (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20962 1jz7:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    20963 1jz7:D (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    20964 1jz7:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20965 1jz7:D (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20966 1jz8:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    20967 1jz8:A (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20968 1jz8:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20969 1jz8:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    20970 1jz8:B (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20971 1jz8:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20972 1jz8:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    20973 1jz8:C (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20974 1jz8:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20975 1jz8:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    20976 1jz8:D (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20977 1jz8:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20978 1jzk:A (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    20979 1jzk:A (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    20980 1jzk:B (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    20981 1jzk:C (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    20982 1jzk:C (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    20983 1jzk:D (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    20984 1jzk:D (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    20985 1jzl:A (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    20986 1jzl:A (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    20987 1jzl:B (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    20988 1jzl:B (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    20989 1jzm:A (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    20990 1jzm:A (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    20991 1jzm:B (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    20992 1jzm:B (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    20993 1jzq:A (3.0) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    20994 1jzq:A (3.0) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    20995 1jzq:A (3.0) BS03 ILA 6.1.1.5 GO:0000049 ... P56690 11584022
    20996 1jzr:A (2.9) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    20997 1jzr:C (2.9) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    20998 1jzs:A (2.5) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    20999 1jzs:A (2.5) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    21000 1jzs:A (2.5) BS03 MRC 6.1.1.5 GO:0000049 ... P56690 11584022 MOAD: Ki=0.25uM
    PDBbind: -logKd/Ki=6.60, Ki=0.25uM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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