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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    19201 1lq8:A (2.4) BS02 peptide ? GO:0004867 ... P05154 12575940
    19202 1lq8:C (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    19203 1lq8:E (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    19204 1lq8:E (2.4) BS02 peptide ? GO:0004867 ... P05154 12575940
    19205 1lq8:G (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    19206 1lqa:A (1.604) BS01 NDP ? GO:0004033 ... P0A9T4 14519207
    19207 1lqa:B (1.604) BS01 NDP ? GO:0004033 ... P0A9T4 14519207
    19208 1lqk:A (1.35) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19209 1lqk:A (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19210 1lqk:B (1.35) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19211 1lqk:B (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19212 1lqo:A (2.0) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19213 1lqo:A (2.0) BS02 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19214 1lqo:A (2.0) BS03 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19215 1lqo:A (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19216 1lqo:B (2.0) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19217 1lqo:B (2.0) BS02 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19218 1lqo:B (2.0) BS03 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19219 1lqo:B (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19220 1lqp:A (1.19) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19221 1lqp:A (1.19) BS02 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19222 1lqp:A (1.19) BS03 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19223 1lqp:A (1.19) BS04 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19224 1lqp:B (1.19) BS01 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19225 1lqp:B (1.19) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19226 1lqp:B (1.19) BS03 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19227 1lqp:B (1.19) BS04 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    19228 1lqt:A (1.05) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    19229 1lqt:A (1.05) BS02 ODP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    19230 1lqt:B (1.05) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    19231 1lqt:B (1.05) BS02 ODP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    19232 1lqu:A (1.25) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    19233 1lqu:A (1.25) BS02 NDP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    19234 1lqu:B (1.25) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    19235 1lqu:B (1.25) BS02 NDP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    19236 1lqv:C (1.6) BS01 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19237 1lqv:C (1.6) BS02 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19238 1lqv:C (1.6) BS03 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19239 1lqv:C (1.6) BS04 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19240 1lqv:C (1.6) BS05 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19241 1lqv:C (1.6) BS06 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19242 1lqv:D (1.6) BS01 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19243 1lqv:D (1.6) BS02 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19244 1lqv:D (1.6) BS03 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19245 1lqv:D (1.6) BS04 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19246 1lqv:D (1.6) BS05 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19247 1lqv:D (1.6) BS06 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    19248 1lr5:A (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    19249 1lr5:A (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    19250 1lr5:A (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    19251 1lr5:B (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    19252 1lr5:B (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    19253 1lr5:B (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    19254 1lr5:C (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    19255 1lr5:C (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    19256 1lr5:C (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    19257 1lr5:D (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    19258 1lr5:D (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    19259 1lr5:D (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    19260 1lra:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 7906540
    19261 1lrh:A (1.9) BS01 BMA ? GO:0000911 ... P13689 12065401
    19262 1lrh:A (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    19263 1lrh:A (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    19264 1lrh:A (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    19265 1lrh:B (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    19266 1lrh:B (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    19267 1lrh:B (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    19268 1lrh:B (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    19269 1lrh:C (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    19270 1lrh:C (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    19271 1lrh:C (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    19272 1lrh:C (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    19273 1lrh:D (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    19274 1lrh:D (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    19275 1lrh:D (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    19276 1lrh:D (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    19277 1lri:A (1.45) BS01 CLR ? GO:0001907 ... P15570 12198300
    19278 1lrj:A (1.9) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    19279 1lrj:A (1.9) BS02 UD1 5.1.3.2 GO:0003978 ... P09147 12019271
    19280 1lrk:A (1.75) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    19281 1lrk:A (1.75) BS02 UD1 5.1.3.2 GO:0003978 ... P09147 12019271
    19282 1lrl:A (1.8) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    19283 1lrl:A (1.8) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 12019271
    19284 1lrn:A (2.1) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    19285 1lrn:B (2.1) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    19286 1lro:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    19287 1lro:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    19288 1lrq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    19289 1lrq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 12441100
    19290 1lrq:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    19291 1lru:A (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    19292 1lru:A (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    19293 1lru:B (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    19294 1lru:B (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    19295 1lru:C (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    19296 1lru:C (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    19297 1lrw:A (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    19298 1lrw:A (2.5) BS02 PQQ 1.1.2.7 GO:0005509 ... P12293 14505072
    19299 1lrw:C (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    19300 1lrw:C (2.5) BS02 PQQ 1.1.2.7 GO:0005509 ... P12293 14505072
    19301 1ls1:A (1.1) BS01 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    19302 1ls1:A (1.1) BS02 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    19303 1ls3:A (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    19304 1ls3:A (2.7) BS02 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    19305 1ls3:A (2.7) BS03 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    19306 1ls3:A (2.7) BS04 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    19307 1ls3:B (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    19308 1ls3:B (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    19309 1ls3:B (2.7) BS03 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    19310 1ls3:C (2.7) BS01 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    19311 1ls3:C (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    19312 1ls3:C (2.7) BS03 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    19313 1ls3:C (2.7) BS04 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    19314 1ls3:D (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    19315 1ls3:D (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    19316 1ls3:D (2.7) BS03 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    19317 1ls6:A (1.9) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 12471039
    19318 1ls6:A (1.9) BS02 NPO 2.8.2.1 GO:0004062 ... P50225 12471039
    19319 1ls6:A (1.9) BS03 NPO 2.8.2.1 GO:0004062 ... P50225 12471039
    19320 1ls9:A (1.3) BS01 HEM ? GO:0005506 ... P83391 12475218
    19321 1lsj:A (2.5) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    19322 1lsj:B (2.5) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    19323 1lso:A (2.6) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    19324 1lso:B (2.6) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    19325 1lsp:A (2.45) BS01 BUL 3.2.1.17 GO:0003796 ... P00717 15299731
    19326 1lss:A (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    19327 1lss:B (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    19328 1lss:C (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    19329 1lss:D (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    19330 1lst:A (1.8) BS01 LYS ? GO:0006865 ... P02911 8496186 PDBbind: -logKd/Ki=7.85, Kd=14nM
    19331 1lt3:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    19332 1lt3:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    19333 1lt3:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    19334 1lt3:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    19335 1lt3:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    19336 1lt4:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    19337 1lt4:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    19338 1lt4:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    19339 1lt4:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    19340 1lt4:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    19341 1lt5:D (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    19342 1lt5:E (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    19343 1lt5:F (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    19344 1lt5:F (1.7) BS02 GAL ? GO:0005576 ... P32890 9384564
    19345 1lt5:G (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    19346 1lt5:H (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    19347 1lt6:D (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564 PDBbind: -logKd/Ki=3.30, IC50=0.5mM
    19348 1lt6:E (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564 PDBbind: -logKd/Ki=3.30, IC50=0.5mM
    19349 1lt6:F (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    19350 1lt6:G (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    19351 1lt6:H (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    19352 1lt6:L (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    19353 1lt6:M (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    19354 1lt6:N (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    19355 1lt6:O (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    19356 1lt6:P (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    19357 1lt8:A (2.05) BS01 ZN 2.1.1.5 GO:0005634 ... Q93088 12220488
    19358 1lt8:A (2.05) BS02 CBH 2.1.1.5 GO:0005634 ... Q93088 12220488 BindingDB: Kd=280nM, Ki=12nM, IC50=87nM
    19359 1lt8:B (2.05) BS01 ZN 2.1.1.5 GO:0005634 ... Q93088 12220488
    19360 1lt8:B (2.05) BS02 CBH 2.1.1.5 GO:0005634 ... Q93088 12220488 BindingDB: Kd=280nM, Ki=12nM, IC50=87nM
    19361 1lt9:B (2.8) BS01 CA ? GO:0005102 ... P02675 12356313
    19362 1lt9:B (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    19363 1lt9:C (2.8) BS01 CA ? GO:0005102 ... P02679 12356313
    19364 1lt9:E (2.8) BS01 CA ? GO:0005102 ... P02675 12356313
    19365 1lt9:E (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    19366 1lt9:F (2.8) BS01 CA ? GO:0005102 ... P02679 12356313
    19367 1lta:D (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    19368 1lta:E (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    19369 1lta:F (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    19370 1lta:G (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    19371 1lta:H (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    19372 1lth:R (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... E8ME30 7656036
    19373 1lth:R (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... E8ME30 7656036
    19374 1lth:T (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... E8ME30 7656036
    19375 1lth:T (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... E8ME30 7656036
    19376 1lti:D (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    19377 1lti:E (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    19378 1lti:G (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    19379 1lti:H (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    19380 1ltj:B (2.8) BS01 peptide ? GO:0005102 ... P02675 12356313
    19381 1ltj:B (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    19382 1ltj:C (2.8) BS01 peptide ? GO:0005102 ... P02679 12356313
    19383 1ltj:C (2.8) BS02 CA ? GO:0005102 ... P02679 12356313
    19384 1ltj:E (2.8) BS01 peptide ? GO:0005102 ... P02675 12356313
    19385 1ltj:E (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    19386 1ltj:F (2.8) BS01 peptide ? GO:0005102 ... P02679 12356313
    19387 1ltj:F (2.8) BS02 CA ? GO:0005102 ... P02679 12356313
    19388 1ltk:A (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    19389 1ltk:B (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    19390 1ltk:C (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    19391 1ltt:D (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    19392 1ltt:E (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    19393 1ltt:F (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    19394 1ltt:G (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    19395 1ltt:H (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    19396 1ltw:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    19397 1ltw:A (1.7) BS02 OXY 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    19398 1ltx:B (2.7) BS01 peptide 2.5.1.60 GO:0003824 ... Q08603 12620235
    19399 1ltx:B (2.7) BS02 ZN 2.5.1.60 GO:0003824 ... Q08603 12620235
    19400 1ltx:B (2.7) BS03 FAR 2.5.1.60 GO:0003824 ... Q08603 12620235

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218