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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17601 1kqa:A (3.2) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17602 1kqa:A (3.2) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17603 1kqa:B (3.2) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17604 1kqa:B (3.2) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17605 1kqa:C (3.2) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17606 1kqa:C (3.2) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17607 1kqb:A (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17608 1kqb:A (1.8) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17609 1kqb:B (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17610 1kqb:B (1.8) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17611 1kqb:C (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17612 1kqb:C (1.8) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17613 1kqb:D (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17614 1kqb:D (1.8) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17615 1kqc:A (1.8) BS01 ACT 1.-.-.- GO:0005829 ... Q01234 11805110
    17616 1kqc:A (1.8) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17617 1kqc:A (1.8) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17618 1kqc:B (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17619 1kqc:B (1.8) BS02 ACT 1.-.-.- GO:0005829 ... Q01234 11805110
    17620 1kqc:B (1.8) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17621 1kqc:C (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17622 1kqc:C (1.8) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17623 1kqc:D (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17624 1kqc:D (1.8) BS02 ACT 1.-.-.- GO:0005829 ... Q01234 11805110
    17625 1kqc:D (1.8) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17626 1kqd:A (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17627 1kqd:A (1.9) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17628 1kqd:B (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17629 1kqd:B (1.9) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17630 1kqd:C (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17631 1kqd:C (1.9) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17632 1kqd:D (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17633 1kqd:D (1.9) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    17634 1kqf:B (1.6) BS01 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17635 1kqf:B (1.6) BS02 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17636 1kqf:B (1.6) BS03 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17637 1kqf:B (1.6) BS04 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17638 1kqf:B (1.6) BS05 HEM 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17639 1kqf:C (1.6) BS01 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    17640 1kqf:C (1.6) BS02 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    17641 1kqg:B (2.8) BS01 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17642 1kqg:B (2.8) BS02 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17643 1kqg:B (2.8) BS03 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17644 1kqg:B (2.8) BS04 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17645 1kqg:B (2.8) BS05 HEM 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    17646 1kqg:C (2.8) BS01 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    17647 1kqg:C (2.8) BS02 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    17648 1kqg:C (2.8) BS03 HQO 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    17649 1kqm:A (3.0) BS01 MG ? GO:0003774 ... P24733 12297624
    17650 1kqm:A (3.0) BS02 ANP ? GO:0003774 ... P24733 12297624
    17651 1kqm:B (3.0) BS01 MG ? GO:0005509 ... P13543 12297624
    17652 1kqm:C (3.0) BS01 CA ? GO:0005509 ... P07291 12297624
    17653 1kqn:A (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17654 1kqn:B (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17655 1kqn:C (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17656 1kqn:D (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17657 1kqn:E (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17658 1kqn:F (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17659 1kqo:A (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17660 1kqo:B (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17661 1kqo:C (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17662 1kqo:D (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17663 1kqo:E (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17664 1kqo:F (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17665 1kqp:A (1.03) BS01 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    17666 1kqp:A (1.03) BS02 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    17667 1kqp:A (1.03) BS03 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    17668 1kqp:A (1.03) BS04 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    17669 1kqp:B (1.03) BS01 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    17670 1kqp:B (1.03) BS02 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    17671 1kqp:B (1.03) BS03 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    17672 1kqp:B (1.03) BS04 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    17673 1kqr:A (1.4) BS01 MNA ? GO:0019028 ... P12473 11867517
    17674 1kqs:1 (3.1) BS01 rna ? GO:0003735 ... P22452 11828326
    17675 1kqs:2 (3.1) BS01 rna ? GO:0000049 ... P32411 11828326
    17676 1kqs:2 (3.1) BS02 MG ? GO:0000049 ... P32411 11828326
    17677 1kqs:A (3.1) BS01 rna ? GO:0002181 ... P20276 11828326
    17678 1kqs:B (3.1) BS01 rna ? GO:0003723 ... P20279 11828326
    17679 1kqs:C (3.1) BS01 rna ? GO:0003723 ... P12735 11828326
    17680 1kqs:D (3.1) BS01 rna ? GO:0000049 ... P14124 11828326
    17681 1kqs:D (3.1) BS02 rna ? GO:0000049 ... P14124 11828326
    17682 1kqs:E (3.1) BS01 rna ? GO:0002181 ... P14135 11828326
    17683 1kqs:F (3.1) BS01 rna ? GO:0001682 ... P12743 11828326
    17684 1kqs:H (3.1) BS01 rna ? GO:0000027 ... P60617 11828326
    17685 1kqs:I (3.1) BS01 rna ? GO:0003729 ... P29198 11828326
    17686 1kqs:J (3.1) BS01 rna ? GO:0003735 ... P22450 11828326
    17687 1kqs:K (3.1) BS01 rna ? GO:0003735 ... P12737 11828326
    17688 1kqs:L (3.1) BS01 rna ? GO:0002181 ... P60618 11828326
    17689 1kqs:M (3.1) BS01 rna ? GO:0000027 ... P14123 11828326
    17690 1kqs:M (3.1) BS02 rna ? GO:0000027 ... P14123 11828326
    17691 1kqs:N (3.1) BS01 rna ? GO:0003723 ... P12733 11828326
    17692 1kqs:O (3.1) BS01 rna ? GO:0003723 ... P14119 11828326
    17693 1kqs:P (3.1) BS01 rna ? GO:0003735 ... P12734 11828326
    17694 1kqs:P (3.1) BS02 rna ? GO:0003735 ... P12734 11828326
    17695 1kqs:Q (3.1) BS01 rna ? GO:0002181 ... P10970 11828326
    17696 1kqs:R (3.1) BS01 rna ? GO:0000027 ... P12732 11828326
    17697 1kqs:S (3.1) BS01 rna ? GO:0002181 ... P10972 11828326
    17698 1kqs:S (3.1) BS02 MG ? GO:0002181 ... P10972 11828326
    17699 1kqs:T (3.1) BS01 rna ? GO:0003735 ... P14116 11828326
    17700 1kqs:U (3.1) BS01 rna ? GO:0003735 ... P10971 11828326
    17701 1kqs:V (3.1) BS01 rna ? GO:0000463 ... P14121 11828326
    17702 1kqs:V (3.1) BS02 rna ? GO:0000463 ... P14121 11828326
    17703 1kqs:W (3.1) BS01 rna ? GO:0002181 ... P18138 11828326
    17704 1kqs:X (3.1) BS01 rna ? GO:0000166 ... P12736 11828326
    17705 1kqs:X (3.1) BS02 MG ? GO:0000166 ... P12736 11828326
    17706 1kqs:Y (3.1) BS01 rna ? GO:0003735 ... P60619 11828326
    17707 1kqs:Z (3.1) BS01 rna ? GO:0003723 ... P32410 11828326
    17708 1kqu:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    17709 1kqu:A (2.1) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    17710 1kqu:A (2.1) BS03 BR4 3.1.1.4 GO:0004623 ... P14555 12616631
    17711 1kqw:A (1.38) BS01 RTL ? GO:0005504 ... Q8UVG6 12162964
    17712 1kr2:A (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17713 1kr2:B (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17714 1kr2:C (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17715 1kr2:D (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17716 1kr2:E (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17717 1kr2:F (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    17718 1kr5:A (2.1) BS01 SAH 2.1.1.77 GO:0004719 ... P22061 11792715
    17719 1krb:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    17720 1krb:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    17721 1krc:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    17722 1krc:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    17723 1kre:A (2.2) BS01 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    17724 1kre:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    17725 1kre:B (2.2) BS02 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    17726 1krf:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    17727 1krf:A (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    17728 1krf:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    17729 1krf:B (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    17730 1krm:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 12554940
    17731 1krm:A (2.5) BS02 PRH 3.5.4.4 GO:0004000 ... P56658 12554940
    17732 1krr:A (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    17733 1krr:A (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    17734 1krr:B (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    17735 1krr:B (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    17736 1krr:C (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    17737 1krr:C (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    17738 1kru:A (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17739 1kru:A (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17740 1kru:A (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17741 1kru:A (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17742 1kru:A (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17743 1kru:A (2.8) BS06 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17744 1kru:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17745 1kru:B (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17746 1kru:B (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17747 1kru:B (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17748 1kru:B (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17749 1kru:C (2.8) BS01 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17750 1kru:C (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17751 1kru:C (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17752 1kru:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17753 1kru:C (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    17754 1krv:A (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    17755 1krv:A (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17756 1krv:A (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    17757 1krv:A (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17758 1krv:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17759 1krv:B (2.8) BS02 147 2.3.1.18 GO:0005737 ... P07464 11937062
    17760 1krv:B (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17761 1krv:B (2.8) BS04 147 2.3.1.18 GO:0005737 ... P07464 11937062
    17762 1krv:C (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    17763 1krv:C (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17764 1krv:C (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    17765 1krv:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    17766 1ksf:X (2.6) BS01 MG ? GO:0004176 ... P0ABH9 12205096
    17767 1ksf:X (2.6) BS02 ADP ? GO:0004176 ... P0ABH9 12205096
    17768 1ksf:X (2.6) BS03 ADP ? GO:0004176 ... P0ABH9 12205096
    17769 1ksg:A (2.3) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    17770 1ksg:A (2.3) BS02 GTP ? GO:0003924 ... Q9D0J4 11980706
    17771 1ksh:A (1.8) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    17772 1ksh:A (1.8) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    17773 1ksj:A (2.6) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    17774 1ksj:A (2.6) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    17775 1ksj:A (2.6) BS03 GTP ? GO:0003924 ... Q9D0J4 11980706
    17776 1ksk:A (2.0) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    17777 1ksl:A (2.1) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    17778 1kss:A (1.8) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    17779 1kss:A (1.8) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17780 1kss:A (1.8) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17781 1kss:A (1.8) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17782 1kss:A (1.8) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17783 1kss:A (1.8) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    17784 1kss:A (1.8) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17785 1ksu:A (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    17786 1ksu:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17787 1ksu:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17788 1ksu:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17789 1ksu:A (2.0) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17790 1ksu:A (2.0) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    17791 1ksu:A (2.0) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17792 1ksu:B (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    17793 1ksu:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17794 1ksu:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17795 1ksu:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17796 1ksu:B (2.0) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17797 1ksu:B (2.0) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    17798 1ksu:B (2.0) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    17799 1ksv:A (2.65) BS01 U 5.4.99.19 GO:0000455 ... P0AA43 11953756
    17800 1ksz:A (2.8) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9182542

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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