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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17201 1kgu:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    17202 1kgw:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    17203 1kgx:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    17204 1kgz:A (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    17205 1kgz:A (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    17206 1kgz:A (2.4) BS03 PRP 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    17207 1kgz:B (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    17208 1kgz:B (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    17209 1kgz:B (2.4) BS03 PRP 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    17210 1kh2:A (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    17211 1kh2:B (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    17212 1kh2:C (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    17213 1kh2:D (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    17214 1kh3:A (2.15) BS01 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    17215 1kh3:A (2.15) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    17216 1kh3:A (2.15) BS03 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    17217 1kh3:B (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    17218 1kh3:B (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    17219 1kh3:B (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    17220 1kh3:C (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    17221 1kh3:C (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    17222 1kh3:C (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    17223 1kh3:D (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    17224 1kh3:D (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    17225 1kh3:D (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    17226 1kh4:A (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17227 1kh4:A (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17228 1kh4:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17229 1kh4:A (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    17230 1kh4:B (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17231 1kh4:B (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17232 1kh4:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17233 1kh4:B (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    17234 1kh5:A (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17235 1kh5:A (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17236 1kh5:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17237 1kh5:A (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    17238 1kh5:B (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17239 1kh5:B (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17240 1kh5:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17241 1kh5:B (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    17242 1kh7:A (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17243 1kh7:A (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17244 1kh7:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17245 1kh7:B (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17246 1kh7:B (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17247 1kh7:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17248 1kh8:A (2.0) BS01 CS 4.6.1.18 GO:0003676 ... P61823 16199662
    17249 1kh9:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17250 1kh9:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17251 1kh9:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17252 1kh9:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    17253 1kh9:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17254 1kh9:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17255 1kh9:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    17256 1khb:A (1.854) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    17257 1khe:A (2.4) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    17258 1khf:A (2.02) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    17259 1khf:A (2.02) BS02 PEP 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    17260 1khg:A (2.34) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    17261 1khj:A (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17262 1khj:A (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17263 1khj:A (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    17264 1khj:B (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17265 1khj:B (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17266 1khj:B (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    17267 1khk:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17268 1khk:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17269 1khk:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17270 1khk:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17271 1khk:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17272 1khk:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    17273 1khl:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17274 1khl:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17275 1khl:A (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    17276 1khl:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17277 1khl:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17278 1khl:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    17279 1khn:A (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17280 1khn:A (2.6) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17281 1khn:A (2.6) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17282 1khn:B (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17283 1khn:B (2.6) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17284 1khn:B (2.6) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    17285 1kho:A (2.4) BS01 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    17286 1kho:A (2.4) BS02 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    17287 1kho:A (2.4) BS03 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    17288 1kho:B (2.4) BS01 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    17289 1kho:B (2.4) BS02 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    17290 1kho:B (2.4) BS03 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    17291 1kht:B (2.5) BS01 AMP 2.7.4.3 GO:0004017 ... P43411 12860130
    17292 1kht:C (2.5) BS01 AMP 2.7.4.3 GO:0004017 ... P43411 12860130
    17293 1khz:A (2.04) BS01 ADV 3.6.1.13 GO:0000287 ... Q93K97 12135348
    17294 1khz:B (2.04) BS01 MG 3.6.1.13 GO:0000287 ... Q93K97 12135348
    17295 1khz:B (2.04) BS02 MG 3.6.1.13 GO:0000287 ... Q93K97 12135348
    17296 1khz:B (2.04) BS03 ADV 3.6.1.13 GO:0000287 ... Q93K97 12135348
    17297 1kia:A (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    17298 1kia:B (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    17299 1kia:C (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    17300 1kia:D (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    17301 1kib:A (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    17302 1kib:B (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    17303 1kib:C (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    17304 1kib:D (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    17305 1kib:E (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    17306 1kib:F (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    17307 1kib:G (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    17308 1kib:H (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    17309 1kif:A (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    17310 1kif:B (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    17311 1kif:C (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    17312 1kif:D (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    17313 1kif:E (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    17314 1kif:F (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    17315 1kif:G (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    17316 1kif:H (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    17317 1kit:A (2.3) BS01 CA 3.2.1.18 GO:0004308 ... P0C6E9 7922030
    17318 1kit:A (2.3) BS02 CA 3.2.1.18 GO:0004308 ... P0C6E9 7922030
    17319 1kiu:B (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    17320 1kiu:D (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    17321 1kiu:F (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    17322 1kiu:H (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    17323 1kiu:J (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    17324 1kiu:L (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    17325 1kiu:N (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    17326 1kiu:P (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    17327 1kix:A (2.7) BS01 dna ? GO:0000723 ... P29549 11836536
    17328 1kj8:A (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17329 1kj8:A (1.6) BS02 ATP 6.3.1.21 GO:0000287 ... P33221 11953435
    17330 1kj8:A (1.6) BS03 GAR 6.3.1.21 GO:0000287 ... P33221 11953435
    17331 1kj8:B (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17332 1kj8:B (1.6) BS02 ATP 6.3.1.21 GO:0000287 ... P33221 11953435
    17333 1kj8:B (1.6) BS03 GAR 6.3.1.21 GO:0000287 ... P33221 11953435
    17334 1kj9:A (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17335 1kj9:A (1.6) BS02 ATP 6.3.1.21 GO:0000287 ... P33221 11953435
    17336 1kj9:B (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17337 1kj9:B (1.6) BS02 ATP 6.3.1.21 GO:0000287 ... P33221 11953435
    17338 1kji:A (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17339 1kji:A (1.6) BS02 ACP 6.3.1.21 GO:0000287 ... P33221 11953435
    17340 1kji:B (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17341 1kji:B (1.6) BS02 ACP 6.3.1.21 GO:0000287 ... P33221 11953435
    17342 1kjj:A (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17343 1kjj:A (1.75) BS02 AGS 6.3.1.21 GO:0000287 ... P33221 11953435
    17344 1kjj:B (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17345 1kjj:B (1.75) BS02 AGS 6.3.1.21 GO:0000287 ... P33221 11953435
    17346 1kjq:A (1.05) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    17347 1kjq:A (1.05) BS02 ADP 6.3.1.21 GO:0000287 ... P33221 11953435
    17348 1kjq:B (1.05) BS01 ADP 6.3.1.21 GO:0000287 ... P33221 11953435
    17349 1kjx:A (2.6) BS01 IMP 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    17350 1kjy:A (2.7) BS01 GDP ? GO:0000287 ... P63096 11976690
    17351 1kjy:C (2.7) BS01 GDP ? GO:0000287 ... P63096 11976690
    17352 1kjz:A (1.85) BS01 ZN 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    17353 1kk0:A (1.95) BS01 ZN 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    17354 1kk1:A (1.8) BS01 ZN 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    17355 1kk1:A (1.8) BS02 GNP 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    17356 1kk2:A (2.1) BS01 ZN 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    17357 1kk2:A (2.1) BS02 GDP 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    17358 1kk3:A (1.9) BS01 ZN 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    17359 1kk3:A (1.9) BS02 GDP 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    17360 1kk7:A (3.2) BS01 MG ? GO:0003774 ... P24733 12297624
    17361 1kk7:Y (3.2) BS01 MG ? GO:0005509 ... P13543 12297624
    17362 1kk7:Z (3.2) BS01 CA ? GO:0005509 ... P07291 12297624
    17363 1kk8:A (2.3) BS01 MG ? GO:0003774 ... P24733 12297624
    17364 1kk8:A (2.3) BS02 BEF ? GO:0003774 ... P24733 12297624
    17365 1kk8:A (2.3) BS03 ADP ? GO:0003774 ... P24733 12297624
    17366 1kk8:C (2.3) BS01 CA ? GO:0005509 ... P07291 12297624
    17367 1kkb:A (2.6) BS01 HDA 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    17368 1kkb:A (2.6) BS02 IMP 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    17369 1kkc:A (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    17370 1kkc:B (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    17371 1kkc:X (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    17372 1kkc:Y (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    17373 1kkf:A (2.6) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    17374 1kkf:A (2.6) BS02 HDA 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    17375 1kkf:A (2.6) BS03 IMP 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    17376 1kkj:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17377 1kkp:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17378 1kkp:A (1.93) BS02 SER 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17379 1kkq:A (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    17380 1kkq:A (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213 PDBbind: -logKd/Ki=6.62, IC50=0.24uM
    17381 1kkq:B (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    17382 1kkq:B (3.0) BS02 peptide ? GO:0003677 ... Q07869 11845213
    17383 1kkq:B (3.0) BS03 471 ? GO:0003677 ... Q07869 11845213
    17384 1kkq:C (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    17385 1kkq:C (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    17386 1kkq:D (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    17387 1kkq:D (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    17388 1kkt:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    17389 1kl1:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17390 1kl1:A (1.93) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17391 1kl2:A (2.7) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17392 1kl2:A (2.7) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17393 1kl2:A (2.7) BS03 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17394 1kl2:A (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17395 1kl2:A (2.7) BS05 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17396 1kl2:B (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17397 1kl2:B (2.7) BS02 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17398 1kl2:B (2.7) BS03 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17399 1kl2:B (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    17400 1kl2:B (2.7) BS05 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218