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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16601 1k7w:C (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    16602 1k7w:C (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    16603 1k7w:D (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    16604 1k7w:D (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    16605 1k7x:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    16606 1k82:A (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16607 1k82:A (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16608 1k82:A (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16609 1k82:A (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16610 1k82:B (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16611 1k82:B (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16612 1k82:B (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16613 1k82:B (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16614 1k82:C (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16615 1k82:C (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16616 1k82:C (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16617 1k82:C (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16618 1k82:D (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16619 1k82:D (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16620 1k82:D (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16621 1k82:D (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    16622 1k83:A (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P04050 11805306
    16623 1k83:A (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    16624 1k83:A (2.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    16625 1k83:A (2.8) BS04 MN 2.7.7.6 GO:0000428 ... P04050 11805306
    16626 1k83:B (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P08518 11805306
    16627 1k83:B (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 11805306
    16628 1k83:C (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11805306
    16629 1k83:I (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    16630 1k83:I (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    16631 1k83:J (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11805306
    16632 1k83:L (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11805306
    16633 1k8a:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    16634 1k8a:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    16635 1k8a:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    16636 1k8a:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    16637 1k8a:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    16638 1k8a:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    16639 1k8a:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    16640 1k8a:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    16641 1k8a:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    16642 1k8a:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    16643 1k8a:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    16644 1k8a:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    16645 1k8a:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    16646 1k8a:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    16647 1k8a:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    16648 1k8a:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    16649 1k8a:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    16650 1k8a:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    16651 1k8a:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    16652 1k8a:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    16653 1k8a:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    16654 1k8a:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    16655 1k8a:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    16656 1k8a:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    16657 1k8a:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    16658 1k8a:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    16659 1k8a:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    16660 1k8a:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    16661 1k8a:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    16662 1k8a:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    16663 1k8a:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    16664 1k8a:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    16665 1k8a:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    16666 1k8a:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    16667 1k8a:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    16668 1k8c:A (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    16669 1k8c:B (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    16670 1k8c:C (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    16671 1k8c:D (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    16672 1k8g:A (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    16673 1k8g:B (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    16674 1k8q:A (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    16675 1k8q:B (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    16676 1k8r:A (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11709168
    16677 1k8r:A (3.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 11709168
    16678 1k8w:A (1.85) BS01 rna 5.4.99.25 GO:0000049 ... P60340 11779468
    16679 1k8x:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    16680 1k8y:B (1.5) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    16681 1k8z:A (1.7) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756454
    16682 1k8z:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    16683 1k90:A (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    16684 1k90:B (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    16685 1k90:C (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    16686 1k90:D (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    16687 1k90:D (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    16688 1k90:E (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    16689 1k90:E (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    16690 1k90:F (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    16691 1k90:F (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    16692 1k93:D (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    16693 1k93:D (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    16694 1k93:E (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    16695 1k93:E (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    16696 1k93:F (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    16697 1k93:F (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    16698 1k96:A (1.44) BS01 CA ? GO:0001726 ... P06703 11937060
    16699 1k96:A (1.44) BS02 CA ? GO:0001726 ... P06703 11937060
    16700 1k97:A (2.0) BS01 ASP 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    16701 1k97:A (2.0) BS02 CIR 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    16702 1k9e:A (1.85) BS01 GCV 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    16703 1k9f:A (1.75) BS01 XYP 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    16704 1k9f:A (1.75) BS02 GCV 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    16705 1k9k:A (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    16706 1k9k:A (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    16707 1k9k:B (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    16708 1k9k:B (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    16709 1k9m:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    16710 1k9m:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    16711 1k9m:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    16712 1k9m:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    16713 1k9m:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    16714 1k9m:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    16715 1k9m:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    16716 1k9m:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    16717 1k9m:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    16718 1k9m:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    16719 1k9m:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    16720 1k9m:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    16721 1k9m:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    16722 1k9m:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    16723 1k9m:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    16724 1k9m:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    16725 1k9m:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    16726 1k9m:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    16727 1k9m:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    16728 1k9m:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    16729 1k9m:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    16730 1k9m:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    16731 1k9m:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    16732 1k9m:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    16733 1k9m:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    16734 1k9m:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    16735 1k9m:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    16736 1k9m:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    16737 1k9m:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    16738 1k9m:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    16739 1k9m:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    16740 1k9m:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    16741 1k9m:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    16742 1k9m:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    16743 1k9m:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    16744 1k9s:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16745 1k9s:A (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    16746 1k9s:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16747 1k9s:B (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16748 1k9s:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16749 1k9s:C (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16750 1k9s:D (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    16751 1k9s:D (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16752 1k9s:D (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16753 1k9s:E (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16754 1k9s:E (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16755 1k9s:E (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16756 1k9s:F (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16757 1k9s:F (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16758 1k9s:F (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16759 1k9y:A (1.9) BS01 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    16760 1k9y:A (1.9) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    16761 1k9y:A (1.9) BS03 AMP 3.1.3.7 GO:0000103 ... P32179 12126627
    16762 1k9z:A (1.5) BS01 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    16763 1k9z:A (1.5) BS02 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    16764 1k9z:A (1.5) BS03 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    16765 1k9z:A (1.5) BS04 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    16766 1k9z:A (1.5) BS05 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    16767 1k9z:A (1.5) BS06 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    16768 1ka0:A (1.8) BS01 AMP 3.1.3.7 GO:0000103 ... P32179 N/A
    16769 1ka1:A (1.3) BS01 CA 3.1.3.7 GO:0000103 ... P32179 12126627
    16770 1ka1:A (1.3) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    16771 1ka1:A (1.3) BS03 A3P 3.1.3.7 GO:0000103 ... P32179 12126627
    16772 1ka6:A (-1.00) BS01 peptide ? GO:0002250 ... O60880 11823424
    16773 1ka7:A (-1.00) BS01 peptide ? GO:0002250 ... O60880 11823424
    16774 1kae:A (1.7) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    16775 1kae:A (1.7) BS02 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    16776 1kae:A (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    16777 1kae:B (1.7) BS01 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    16778 1kae:B (1.7) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    16779 1kae:B (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    16780 1kah:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    16781 1kah:A (2.1) BS02 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    16782 1kah:A (2.1) BS03 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    16783 1kah:B (2.1) BS01 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    16784 1kah:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    16785 1kao:A (1.7) BS01 GDP 3.6.5.2 GO:0000287 ... P10114 9312017
    16786 1kap:P (1.64) BS01 peptide 3.4.24.40 GO:0001869 ... Q03023 8253063
    16787 1kap:P (1.64) BS02 ZN 3.4.24.40 GO:0001869 ... Q03023 8253063
    16788 1kap:P (1.64) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    16789 1kap:P (1.64) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    16790 1kap:P (1.64) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    16791 1kap:P (1.64) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    16792 1kap:P (1.64) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    16793 1kap:P (1.64) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    16794 1kap:P (1.64) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    16795 1kap:P (1.64) BS10 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    16796 1kar:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    16797 1kar:A (2.1) BS02 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    16798 1kar:B (2.1) BS01 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    16799 1kar:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    16800 1kar:B (2.1) BS03 HSM 1.1.1.23 GO:0000105 ... P06988 11842181

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218