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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10201 1gtr:A (2.5) BS02 ATP 6.1.1.18 GO:0000166 ... P00962 1857417
    10202 1gts:A (2.8) BS01 rna 6.1.1.18 GO:0000166 ... P00962 8364025
    10203 1gts:A (2.8) BS02 AMP 6.1.1.18 GO:0000166 ... P00962 8364025
    10204 1gtv:A (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    10205 1gtv:A (1.55) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    10206 1gtv:A (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    10207 1gtv:A (1.55) BS04 TMP 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    10208 1gtv:B (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    10209 1gtv:B (1.55) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    10210 1gtv:B (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    10211 1gtv:B (1.55) BS04 TMP 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    10212 1gu2:A (1.19) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    10213 1gu2:B (1.19) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    10214 1gu6:A (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10215 1gu6:A (2.5) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10216 1gu6:A (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10217 1gu6:A (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10218 1gu6:A (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10219 1gu6:A (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10220 1gu6:C (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10221 1gu6:C (2.5) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10222 1gu6:C (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10223 1gu6:C (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10224 1gu6:C (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10225 1gu6:C (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10226 1gu6:C (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10227 1gu6:E (2.5) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10228 1gu6:E (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10229 1gu6:E (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10230 1gu6:E (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10231 1gu6:E (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10232 1gu6:E (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10233 1gu6:E (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10234 1gu6:G (2.5) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10235 1gu6:G (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10236 1gu6:G (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10237 1gu6:G (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10238 1gu6:G (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10239 1gu6:G (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10240 1gu6:G (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    10241 1gu8:A (2.27) BS01 RET ? GO:0005216 ... P42196 11937052
    10242 1gua:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P62834 8756332
    10243 1gua:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P62834 8756332 MOAD: Kd=40nM
    10244 1gud:A (1.71) BS01 ZN ? GO:0015752 ... P39265 10064713
    10245 1gue:A (2.27) BS01 RET ? GO:0005216 ... P42196 11937052
    10246 1guf:A (2.25) BS01 NDP 1.3.1.104 GO:0005739 ... Q8WZM3 12614607
    10247 1guf:B (2.25) BS01 NDP 1.3.1.104 GO:0005739 ... Q8WZM3 12614607
    10248 1guh:A (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    10249 1guh:A (2.6) BS02 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    10250 1guh:B (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    10251 1guh:B (2.6) BS02 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    10252 1guh:C (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    10253 1guh:C (2.6) BS02 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    10254 1guh:D (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    10255 1guh:D (2.6) BS02 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    10256 1guj:B (1.62) BS01 peptide ? GO:0005179 ... P01308 12051853
    10257 1guj:D (1.62) BS01 peptide ? GO:0005179 ... P01308 12051853
    10258 1gul:A (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10259 1gul:A (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10260 1gul:B (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10261 1gul:B (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10262 1gul:C (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10263 1gul:C (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10264 1gul:D (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10265 1gul:D (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10266 1gul:E (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10267 1gul:E (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10268 1gul:F (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10269 1gul:F (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10270 1gul:G (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10271 1gul:G (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10272 1gul:H (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10273 1gul:H (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    10274 1gup:A (1.8) BS01 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    10275 1gup:A (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    10276 1gup:A (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    10277 1gup:A (1.8) BS04 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    10278 1gup:A (1.8) BS05 K 2.7.7.12 GO:0004335 ... P09148 9063869
    10279 1gup:B (1.8) BS01 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    10280 1gup:B (1.8) BS02 K 2.7.7.12 GO:0004335 ... P09148 9063869
    10281 1gup:B (1.8) BS03 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    10282 1gup:B (1.8) BS04 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    10283 1gup:B (1.8) BS05 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    10284 1gup:C (1.8) BS01 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    10285 1gup:C (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    10286 1gup:C (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    10287 1gup:C (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    10288 1gup:C (1.8) BS05 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    10289 1gup:D (1.8) BS01 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    10290 1gup:D (1.8) BS02 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    10291 1gup:D (1.8) BS03 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    10292 1gup:D (1.8) BS04 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    10293 1gup:D (1.8) BS05 K 2.7.7.12 GO:0004335 ... P09148 9063869
    10294 1guq:A (1.8) BS01 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    10295 1guq:A (1.8) BS02 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    10296 1guq:A (1.8) BS03 K 2.7.7.12 GO:0004335 ... P09148 9063869
    10297 1guq:A (1.8) BS04 UPG 2.7.7.12 GO:0004335 ... P09148 9063869
    10298 1guq:A (1.8) BS05 UPG 2.7.7.12 GO:0004335 ... P09148 9063869
    10299 1guq:B (1.8) BS01 UPG 2.7.7.12 GO:0004335 ... P09148 9063869
    10300 1guq:B (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    10301 1guq:B (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    10302 1guq:B (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    10303 1guq:B (1.8) BS05 UPG 2.7.7.12 GO:0004335 ... P09148 9063869
    10304 1guq:C (1.8) BS01 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    10305 1guq:C (1.8) BS02 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    10306 1guq:C (1.8) BS03 K 2.7.7.12 GO:0004335 ... P09148 9063869
    10307 1guq:C (1.8) BS04 UPG 2.7.7.12 GO:0004335 ... P09148 9063869
    10308 1guq:C (1.8) BS05 UPG 2.7.7.12 GO:0004335 ... P09148 9063869
    10309 1guq:D (1.8) BS01 UPG 2.7.7.12 GO:0004335 ... P09148 9063869
    10310 1guq:D (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    10311 1guq:D (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    10312 1guq:D (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    10313 1guq:D (1.8) BS05 UPG 2.7.7.12 GO:0004335 ... P09148 9063869
    10314 1gux:B (1.85) BS01 peptide ? GO:0005634 ... P06400 9495340
    10315 1guy:A (2.2) BS01 NAD 1.1.1.37 GO:0003824 ... P80040 12054817
    10316 1guy:C (2.2) BS01 NAD 1.1.1.37 GO:0003824 ... P80040 12054817
    10317 1gv8:A (1.95) BS01 GLY ? GO:0005576 ... P56410 11976488
    10318 1gv8:A (1.95) BS02 CO3 ? GO:0005576 ... P56410 11976488
    10319 1gv8:A (1.95) BS03 FE ? GO:0005576 ... P56410 11976488
    10320 1gvc:A (1.9) BS01 CO3 ? GO:0005576 ... P56410 11976488
    10321 1gvc:A (1.9) BS02 NTA ? GO:0005576 ... P56410 11976488
    10322 1gve:A (1.38) BS01 NAP 1.-.-.- GO:0004033 ... P38918 11839745
    10323 1gvf:A (1.45) BS01 PGH 4.1.2.40 GO:0005515 ... P0AB74 11940603
    10324 1gvf:A (1.45) BS02 ZN 4.1.2.40 GO:0005515 ... P0AB74 11940603
    10325 1gvf:B (1.45) BS01 PGH 4.1.2.40 GO:0005515 ... P0AB74 11940603
    10326 1gvf:B (1.45) BS02 ZN 4.1.2.40 GO:0005515 ... P0AB74 11940603
    10327 1gvh:A (2.19) BS01 FAD 1.14.12.17 GO:0005344 ... P24232 11964402
    10328 1gvh:A (2.19) BS02 HEM 1.14.12.17 GO:0005344 ... P24232 11964402
    10329 1gvk:B (0.94) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 11896054
    10330 1gvk:B (0.94) BS02 CA 3.4.21.36 GO:0004252 ... P00772 11896054
    10331 1gvo:A (1.38) BS01 FMN ? GO:0000166 ... P71278 11923299
    10332 1gvo:A (1.38) BS02 DNF ? GO:0000166 ... P71278 11923299
    10333 1gvq:A (2.0) BS01 FMN ? GO:0000166 ... P71278 11923299
    10334 1gvq:A (2.0) BS02 A2Q ? GO:0000166 ... P71278 11923299
    10335 1gvr:A (1.38) BS01 FMN ? GO:0000166 ... P71278 11923299
    10336 1gvr:A (1.38) BS02 TNL ? GO:0000166 ... P71278 11923299
    10337 1gvs:A (1.38) BS01 FMN ? GO:0000166 ... P71278 11923299
    10338 1gvs:A (1.38) BS02 TNF ? GO:0000166 ... P71278 11923299
    10339 1gw0:A (2.4) BS01 BMA 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10340 1gw0:A (2.4) BS02 MAN 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10341 1gw0:A (2.4) BS03 OXY 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10342 1gw0:A (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10343 1gw0:A (2.4) BS05 CU 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10344 1gw0:A (2.4) BS06 CU 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10345 1gw0:A (2.4) BS07 CU 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10346 1gw0:B (2.4) BS01 MAN 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10347 1gw0:B (2.4) BS02 MAN 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10348 1gw0:B (2.4) BS03 OXY 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10349 1gw0:B (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10350 1gw0:B (2.4) BS05 CU 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10351 1gw0:B (2.4) BS06 CU 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10352 1gw0:B (2.4) BS07 CU 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    10353 1gw2:A (2.15) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    10354 1gw2:A (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    10355 1gw2:A (2.15) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    10356 1gw2:A (2.15) BS04 FER 1.11.1.7 GO:0004601 ... P00433 N/A
    10357 1gw2:A (2.15) BS05 FER 1.11.1.7 GO:0004601 ... P00433 N/A
    10358 1gw6:A (2.2) BS01 BES 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 11917124 BindingDB: IC50=4000nM, Kd=2050nM, Ki=320nM
    10359 1gw6:A (2.2) BS02 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 11917124
    10360 1gw9:A (1.55) BS01 CA 5.3.1.5 GO:0000287 ... P24300 12037300
    10361 1gw9:A (1.55) BS02 CA 5.3.1.5 GO:0000287 ... P24300 12037300
    10362 1gw9:A (1.55) BS03 LXC 5.3.1.5 GO:0000287 ... P24300 12037300
    10363 1gwa:A (1.85) BS01 CA 3.4.21.36 GO:0004252 ... P00772 12037300
    10364 1gwc:A (2.25) BS01 GTX 2.5.1.18 GO:0004364 ... O04941 12033934
    10365 1gwc:B (2.25) BS01 GTX 2.5.1.18 GO:0004364 ... O04941 12033934
    10366 1gwc:C (2.25) BS01 GTX 2.5.1.18 GO:0004364 ... O04941 12033934
    10367 1gwd:A (1.77) BS01 IOD 3.2.1.17 GO:0003796 ... P00698 12037300
    10368 1gwd:A (1.77) BS02 IOD 3.2.1.17 GO:0003796 ... P00698 12037300
    10369 1gwe:A (0.88) BS01 HEM 1.11.1.6 GO:0004096 ... P29422 12454454
    10370 1gwf:A (1.96) BS01 HEM 1.11.1.6 GO:0004096 ... P29422 12454454
    10371 1gwf:A (1.96) BS02 O 1.11.1.6 GO:0004096 ... P29422 12454454
    10372 1gwg:A (2.01) BS01 IOD ? GO:0005506 ... P02791 12037300
    10373 1gwg:A (2.01) BS02 IOD ? GO:0005506 ... P02791 12037300
    10374 1gwg:A (2.01) BS03 IOD ? GO:0005506 ... P02791 12037300
    10375 1gwh:A (1.74) BS01 HEM 1.11.1.6 GO:0004096 ... P29422 12454454
    10376 1gwh:A (1.74) BS02 NDP 1.11.1.6 GO:0004096 ... P29422 12454454
    10377 1gwj:A (2.2) BS01 FMN ? GO:0000166 ... Q51990 12048188
    10378 1gwo:A (2.07) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    10379 1gwo:A (2.07) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    10380 1gwo:A (2.07) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    10381 1gwt:A (1.7) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    10382 1gwt:A (1.7) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    10383 1gwt:A (1.7) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    10384 1gwu:A (1.31) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    10385 1gwu:A (1.31) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    10386 1gwu:A (1.31) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    10387 1gwv:A (2.5) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 12011052
    10388 1gwv:A (2.5) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    10389 1gwv:A (2.5) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 MOAD: Kd=0.053mM
    10390 1gwv:A (2.5) BS04 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    10391 1gwv:B (2.5) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 12011052
    10392 1gwv:B (2.5) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    10393 1gwv:B (2.5) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 MOAD: Kd=0.053mM
    10394 1gwv:B (2.5) BS04 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    10395 1gww:A (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 PDBbind: -logKd/Ki=3.59, Kd=0.258mM
    10396 1gww:A (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    10397 1gww:B (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 12011052
    10398 1gww:B (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    10399 1gww:B (1.8) BS03 GLC 2.4.1.87 GO:0005975 ... P14769 12011052
    10400 1gwx:A (2.5) BS01 433 ? GO:0003677 ... Q03181 10198642 BindingDB: EC50=190nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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