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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9801 1gpu:B (1.86) BS03 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    9802 1gpw:C (2.4) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    9803 1gpw:C (2.4) BS02 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    9804 1gpw:E (2.4) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    9805 1gpx:A (-1.00) BS01 GA ? GO:0005515 ... P00259 9835048
    9806 1gpy:A (2.4) BS01 G6P 2.4.1.1 GO:0000166 ... P00489 8331662 MOAD: Kd~25uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    9807 1gpy:A (2.4) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 8331662
    9808 1gq1:A (1.4) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9809 1gq1:A (1.4) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9810 1gq1:A (1.4) BS03 SO4 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9811 1gq1:A (1.4) BS04 SO4 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9812 1gq1:A (1.4) BS05 SO4 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9813 1gq1:B (1.4) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9814 1gq1:B (1.4) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9815 1gq1:B (1.4) BS03 SO4 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9816 1gq1:B (1.4) BS04 SO4 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9817 1gq1:B (1.4) BS05 SO4 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9818 1gq1:B (1.4) BS06 SO4 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9819 1gq1:B (1.4) BS07 SO4 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 12556530
    9820 1gq2:A (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9821 1gq2:A (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9822 1gq2:A (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9823 1gq2:B (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9824 1gq2:B (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9825 1gq2:B (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9826 1gq2:C (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9827 1gq2:C (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9828 1gq2:C (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9829 1gq2:D (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9830 1gq2:D (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9831 1gq2:D (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9832 1gq2:E (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9833 1gq2:E (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9834 1gq2:E (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9835 1gq2:F (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9836 1gq2:F (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9837 1gq2:F (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9838 1gq2:G (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9839 1gq2:G (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9840 1gq2:G (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9841 1gq2:H (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9842 1gq2:H (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9843 1gq2:H (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9844 1gq2:I (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9845 1gq2:I (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9846 1gq2:I (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9847 1gq2:J (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9848 1gq2:J (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9849 1gq2:J (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9850 1gq2:K (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9851 1gq2:K (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9852 1gq2:K (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9853 1gq2:L (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9854 1gq2:L (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9855 1gq2:L (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9856 1gq2:M (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9857 1gq2:M (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9858 1gq2:M (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9859 1gq2:N (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9860 1gq2:N (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9861 1gq2:N (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9862 1gq2:O (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9863 1gq2:O (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9864 1gq2:O (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9865 1gq2:P (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    9866 1gq2:P (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    9867 1gq2:P (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    9868 1gq9:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    9869 1gq9:A (2.6) BS02 CTP 2.7.7.38 GO:0005737 ... P42216 11802716
    9870 1gq9:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    9871 1gq9:B (2.6) BS02 CTP 2.7.7.38 GO:0005737 ... P42216 11802716
    9872 1gqa:A (1.8) BS01 HEC ? GO:0005506 ... P00148 N/A
    9873 1gqa:D (1.8) BS01 HEC ? GO:0005506 ... P00148 N/A
    9874 1gqc:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    9875 1gqc:A (2.6) BS02 CMK 2.7.7.38 GO:0005737 ... P42216 11802716
    9876 1gqc:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    9877 1gqc:B (2.6) BS02 C5P 2.7.7.38 GO:0005737 ... P42216 11802716
    9878 1gqi:A (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9879 1gqi:A (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9880 1gqi:A (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9881 1gqi:B (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9882 1gqi:B (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9883 1gqi:B (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9884 1gqi:B (1.48) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9885 1gqj:A (1.9) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9886 1gqj:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9887 1gqj:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9888 1gqj:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9889 1gqj:A (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9890 1gqj:B (1.9) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9891 1gqj:B (1.9) BS02 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9892 1gqj:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9893 1gqj:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9894 1gqj:B (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9895 1gqk:A (1.9) BS01 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9896 1gqk:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9897 1gqk:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9898 1gqk:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9899 1gqk:B (1.9) BS01 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9900 1gqk:B (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9901 1gqk:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9902 1gqk:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9903 1gql:A (1.67) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9904 1gql:A (1.67) BS02 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9905 1gql:A (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9906 1gql:A (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9907 1gql:A (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9908 1gql:A (1.67) BS06 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9909 1gql:B (1.67) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9910 1gql:B (1.67) BS02 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9911 1gql:B (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9912 1gql:B (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9913 1gql:B (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    9914 1gqm:A (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9915 1gqm:A (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9916 1gqm:A (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9917 1gqm:B (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9918 1gqm:B (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9919 1gqm:B (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9920 1gqm:C (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9921 1gqm:C (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9922 1gqm:C (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9923 1gqm:D (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9924 1gqm:D (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9925 1gqm:D (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9926 1gqm:E (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9927 1gqm:E (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9928 1gqm:E (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9929 1gqm:F (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9930 1gqm:F (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9931 1gqm:F (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9932 1gqm:G (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9933 1gqm:G (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9934 1gqm:G (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9935 1gqm:H (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9936 1gqm:H (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9937 1gqm:H (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9938 1gqm:I (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9939 1gqm:I (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9940 1gqm:I (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9941 1gqm:J (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9942 1gqm:J (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9943 1gqm:J (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9944 1gqm:K (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9945 1gqm:K (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9946 1gqm:K (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9947 1gqm:L (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    9948 1gqm:L (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    9949 1gqm:L (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    9950 1gqr:A (2.2) BS01 SAF 3.1.1.7 GO:0001507 ... P04058 11888271 BindingDB: Ki=700nM
    9951 1gqr:A (2.2) BS02 EMM 3.1.1.7 GO:0001507 ... P04058 11888271
    9952 1gqs:A (3.0) BS01 SAF 3.1.1.7 GO:0001507 ... P04058 11888271 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    BindingDB: Ki=700nM
    9953 1gqt:A (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9954 1gqt:A (2.34) BS02 ACP 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9955 1gqt:A (2.34) BS03 RIB 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9956 1gqt:B (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9957 1gqt:B (2.34) BS02 ACP 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9958 1gqt:B (2.34) BS03 RIB 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9959 1gqt:C (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9960 1gqt:C (2.34) BS02 ACP 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9961 1gqt:C (2.34) BS03 RIB 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9962 1gqt:D (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9963 1gqt:D (2.34) BS02 RIB 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    9964 1gqw:A (3.0) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 11955067
    9965 1gqw:A (3.0) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 11955067
    9966 1gqw:B (3.0) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 11955067
    9967 1gqw:B (3.0) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 11955067
    9968 1gqy:A (1.8) BS01 ACP 6.3.2.8 GO:0005524 ... P45066 N/A
    9969 1gqy:A (1.8) BS02 MG 6.3.2.8 GO:0005524 ... P45066 N/A
    9970 1gqy:B (1.8) BS01 ACP 6.3.2.8 GO:0005524 ... P45066 N/A
    9971 1gqy:B (1.8) BS02 MG 6.3.2.8 GO:0005524 ... P45066 N/A
    9972 1gr0:A (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P9WKI1 12005437
    9973 1gr2:A (1.9) BS01 KAI ? GO:0015276 ... P19491 9804426 BindingDB: EC50=380000nM, Ki=3690nM
    9974 1gr7:A (1.8) BS01 CU ? GO:0005507 ... P00282 12007613
    9975 1gr7:B (1.8) BS01 CU ? GO:0005507 ... P00282 12007613
    9976 1gr7:C (1.8) BS01 CU ? GO:0005507 ... P00282 12007613
    9977 1gr7:D (1.8) BS01 CU ? GO:0005507 ... P00282 12007613
    9978 1gra:A (2.0) BS01 FAD 1.8.1.7 GO:0004362 ... P00390 2585516
    9979 1gra:A (2.0) BS02 NDP 1.8.1.7 GO:0004362 ... P00390 2585516
    9980 1gra:A (2.0) BS03 GSH 1.8.1.7 GO:0004362 ... P00390 2585516
    9981 1gra:A (2.0) BS04 GSH 1.8.1.7 GO:0004362 ... P00390 2585516
    9982 1grb:A (1.85) BS01 PO4 1.8.1.7 GO:0004362 ... P00390 2585516
    9983 1grb:A (1.85) BS02 FAD 1.8.1.7 GO:0004362 ... P00390 2585516
    9984 1grb:A (1.85) BS03 NAD 1.8.1.7 GO:0004362 ... P00390 2585516
    9985 1grb:A (1.85) BS04 NDP 1.8.1.7 GO:0004362 ... P00390 2585516
    9986 1gre:A (2.0) BS01 PO4 1.8.1.7 GO:0004362 ... P00390 2585516
    9987 1gre:A (2.0) BS02 FAD 1.8.1.7 GO:0004362 ... P00390 2585516
    9988 1gre:A (2.0) BS03 GSH 1.8.1.7 GO:0004362 ... P00390 2585516
    9989 1grf:A (2.0) BS01 PO4 1.8.1.7 GO:0004362 ... P00390 2585516
    9990 1grf:A (2.0) BS02 FAD 1.8.1.7 GO:0004362 ... P00390 2585516
    9991 1grg:A (2.0) BS01 PO4 1.8.1.7 GO:0004362 ... P00390 2585516
    9992 1grg:A (2.0) BS02 FAD 1.8.1.7 GO:0004362 ... P00390 2585516
    9993 1grh:A (3.0) BS01 FAD 1.8.1.7 GO:0004362 ... P00390 3338461
    9994 1grn:A (2.1) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9846874
    9995 1grn:A (2.1) BS02 GDP 3.6.5.2 GO:0000139 ... P60953 9846874
    9996 1grn:A (2.1) BS03 AF3 3.6.5.2 GO:0000139 ... P60953 9846874
    9997 1gro:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... P08200 8745407
    9998 1grp:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... P08200 8745407
    9999 1grt:A (2.3) BS01 FAD 1.8.1.7 GO:0004362 ... P00390 9174360
    10000 1grv:A (2.9) BS01 MG 2.4.2.8 GO:0000166 ... P0A9M2 12070315

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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