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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    96801 3m0w:C (2.8) BS01 P77 ? GO:0001837 ... P26447 N/A
    96802 3m0w:C (2.8) BS02 P77 ? GO:0001837 ... P26447 N/A
    96803 3m0w:C (2.8) BS03 CA ? GO:0001837 ... P26447 N/A
    96804 3m0w:C (2.8) BS04 CA ? GO:0001837 ... P26447 N/A
    96805 3m0w:D (2.8) BS01 CA ? GO:0001837 ... P26447 N/A
    96806 3m0w:D (2.8) BS02 CA ? GO:0001837 ... P26447 N/A
    96807 3m0w:D (2.8) BS03 P77 ? GO:0001837 ... P26447 N/A
    96808 3m0w:E (2.8) BS01 P77 ? GO:0001837 ... P26447 N/A
    96809 3m0w:E (2.8) BS02 P77 ? GO:0001837 ... P26447 N/A
    96810 3m0w:E (2.8) BS03 CA ? GO:0001837 ... P26447 N/A
    96811 3m0w:E (2.8) BS04 CA ? GO:0001837 ... P26447 N/A
    96812 3m0w:F (2.8) BS01 CA ? GO:0001837 ... P26447 N/A
    96813 3m0w:F (2.8) BS02 CA ? GO:0001837 ... P26447 N/A
    96814 3m0w:F (2.8) BS03 P77 ? GO:0001837 ... P26447 N/A
    96815 3m0w:G (2.8) BS01 CA ? GO:0001837 ... P26447 N/A
    96816 3m0w:G (2.8) BS02 CA ? GO:0001837 ... P26447 N/A
    96817 3m0w:H (2.8) BS01 P77 ? GO:0001837 ... P26447 N/A
    96818 3m0w:H (2.8) BS02 CA ? GO:0001837 ... P26447 N/A
    96819 3m0w:H (2.8) BS03 CA ? GO:0001837 ... P26447 N/A
    96820 3m0w:I (2.8) BS01 P77 ? GO:0001837 ... P26447 N/A
    96821 3m0w:I (2.8) BS02 P77 ? GO:0001837 ... P26447 N/A
    96822 3m0w:I (2.8) BS03 P77 ? GO:0001837 ... P26447 N/A
    96823 3m0w:I (2.8) BS04 CA ? GO:0001837 ... P26447 N/A
    96824 3m0w:I (2.8) BS05 CA ? GO:0001837 ... P26447 N/A
    96825 3m0w:J (2.8) BS01 P77 ? GO:0001837 ... P26447 N/A
    96826 3m0w:J (2.8) BS02 P77 ? GO:0001837 ... P26447 N/A
    96827 3m0w:J (2.8) BS03 CA ? GO:0001837 ... P26447 N/A
    96828 3m0w:J (2.8) BS04 CA ? GO:0001837 ... P26447 N/A
    96829 3m12:A (1.6) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 20353187
    96830 3m12:B (1.6) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 20353187
    96831 3m13:A (2.1) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 20353187
    96832 3m13:B (2.1) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 20353187
    96833 3m13:C (2.1) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 20353187
    96834 3m13:D (2.1) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 20353187
    96835 3m14:A (1.38) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96836 3m14:A (1.38) BS02 BEV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96837 3m15:A (2.6) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    96838 3m15:A (2.6) BS02 ZN ? GO:0005506 ... P0ABE7 20721993
    96839 3m15:B (2.6) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    96840 3m15:B (2.6) BS02 ZN ? GO:0005506 ... P0ABE7 20721993
    96841 3m15:C (2.6) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    96842 3m1c:A (3.0) BS01 XYL ? GO:0016020 ... P89445 20601960
    96843 3m1f:A (2.89) BS01 peptide 3.6.4.- GO:0000287 ... P68135 20804767
    96844 3m1f:A (2.89) BS02 ATP 3.6.4.- GO:0000287 ... P68135 20804767
    96845 3m1i:A (2.0) BS01 GTP ? GO:0000054 ... P32835 20485264
    96846 3m1i:A (2.0) BS02 MG ? GO:0000054 ... P32835 20485264
    96847 3m1j:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20931644
    96848 3m1k:A (1.35) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20629007
    96849 3m1k:A (1.35) BS02 BEW 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20629007 MOAD: Ki=4.1uM
    PDBbind: -logKd/Ki=5.39, Ki=4.1uM
    96850 3m1o:A (1.2) BS01 CJZ ? GO:0005179 ... P02766 21059958
    96851 3m1o:B (1.2) BS01 CJZ ? GO:0005179 ... P02766 21059958
    96852 3m1q:A (1.69) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96853 3m1s:A (3.134) BS01 DW1 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 20821241 PDBbind: -logKd/Ki=9.00, IC50=1.0nM
    96854 3m1s:B (3.134) BS01 DW1 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 20821241
    96855 3m1v:A (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96856 3m1v:A (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96857 3m1v:A (1.45) BS03 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96858 3m1v:A (1.45) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96859 3m1v:A (1.45) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96860 3m1v:B (1.45) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96861 3m1v:B (1.45) BS02 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96862 3m1v:B (1.45) BS03 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96863 3m1v:C (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96864 3m1v:D (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96865 3m1v:D (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96866 3m1v:D (1.45) BS03 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96867 3m1v:D (1.45) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96868 3m1v:D (1.45) BS05 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96869 3m1v:E (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96870 3m1v:E (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96871 3m1v:E (1.45) BS03 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96872 3m1v:F (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96873 3m1w:A (1.38) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96874 3m1y:A (2.4) BS01 MG 3.1.3.3 GO:0000287 ... O25367 N/A
    96875 3m1y:B (2.4) BS01 MG 3.1.3.3 GO:0000287 ... O25367 N/A
    96876 3m1y:C (2.4) BS01 MG 3.1.3.3 GO:0000287 ... O25367 N/A
    96877 3m1y:D (2.4) BS01 MG 3.1.3.3 GO:0000287 ... O25367 N/A
    96878 3m1z:A (1.42) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 20369850
    96879 3m1z:A (1.42) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 20369850
    96880 3m1z:B (1.42) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 20369850
    96881 3m1z:B (1.42) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 20369850
    96882 3m2j:A (1.8) BS01 F5M 3.5.2.6 GO:0005886 ... P00808 N/A
    96883 3m2k:A (3.5) BS01 CEF 3.5.2.6 GO:0005886 ... P00808 21443768
    96884 3m2k:B (3.5) BS01 CEF 3.5.2.6 GO:0005886 ... P00808 21443768
    96885 3m2m:A (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    96886 3m2m:A (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    96887 3m2m:C (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    96888 3m2m:C (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    96889 3m2m:D (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    96890 3m2m:D (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    96891 3m2m:E (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    96892 3m2m:E (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    96893 3m2m:H (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    96894 3m2m:H (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    96895 3m2n:A (1.65) BS01 J74 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22440859
    96896 3m2n:A (1.65) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22440859
    96897 3m2r:A (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96898 3m2r:A (1.3) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96899 3m2r:A (1.3) BS03 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96900 3m2r:A (1.3) BS04 TPZ 2.8.4.1 GO:0005737 ... P11558 20707311
    96901 3m2r:A (1.3) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96902 3m2r:A (1.3) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96903 3m2r:A (1.3) BS07 TPZ 2.8.4.1 GO:0005737 ... P11558 20707311
    96904 3m2r:B (1.3) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96905 3m2r:B (1.3) BS02 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96906 3m2r:B (1.3) BS03 TPZ 2.8.4.1 GO:0005737 ... P11560 20707311
    96907 3m2r:B (1.3) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96908 3m2r:C (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96909 3m2r:D (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96910 3m2r:D (1.3) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96911 3m2r:D (1.3) BS03 TPZ 2.8.4.1 GO:0005737 ... P11558 20707311
    96912 3m2r:D (1.3) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96913 3m2r:D (1.3) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96914 3m2r:D (1.3) BS06 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96915 3m2r:D (1.3) BS07 TPZ 2.8.4.1 GO:0005737 ... P11558 20707311
    96916 3m2r:E (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96917 3m2r:E (1.3) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96918 3m2r:E (1.3) BS03 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96919 3m2r:E (1.3) BS04 TPZ 2.8.4.1 GO:0005737 ... P11560 20707311
    96920 3m2r:F (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96921 3m2u:A (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96922 3m2u:A (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96923 3m2u:A (1.4) BS03 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96924 3m2u:A (1.4) BS04 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    96925 3m2u:A (1.4) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96926 3m2u:A (1.4) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96927 3m2u:A (1.4) BS07 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    96928 3m2u:B (1.4) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96929 3m2u:B (1.4) BS02 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96930 3m2u:B (1.4) BS03 TXZ 2.8.4.1 GO:0005737 ... P11560 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    96931 3m2u:B (1.4) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96932 3m2u:C (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96933 3m2u:D (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96934 3m2u:D (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96935 3m2u:D (1.4) BS03 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    96936 3m2u:D (1.4) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96937 3m2u:D (1.4) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96938 3m2u:D (1.4) BS06 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96939 3m2u:D (1.4) BS07 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    96940 3m2u:E (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96941 3m2u:E (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96942 3m2u:E (1.4) BS03 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96943 3m2u:E (1.4) BS04 TXZ 2.8.4.1 GO:0005737 ... P11560 20707311
    96944 3m2u:F (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96945 3m2v:A (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96946 3m2v:A (1.8) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96947 3m2v:A (1.8) BS03 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96948 3m2v:A (1.8) BS04 XP8 2.8.4.1 GO:0005737 ... P11558 20707311
    96949 3m2v:A (1.8) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96950 3m2v:A (1.8) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96951 3m2v:A (1.8) BS07 XP8 2.8.4.1 GO:0005737 ... P11558 20707311
    96952 3m2v:B (1.8) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96953 3m2v:B (1.8) BS02 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96954 3m2v:B (1.8) BS03 XP8 2.8.4.1 GO:0005737 ... P11560 20707311
    96955 3m2v:B (1.8) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96956 3m2v:C (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96957 3m2v:D (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96958 3m2v:D (1.8) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96959 3m2v:D (1.8) BS03 XP8 2.8.4.1 GO:0005737 ... P11558 20707311
    96960 3m2v:D (1.8) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96961 3m2v:D (1.8) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96962 3m2v:D (1.8) BS06 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96963 3m2v:D (1.8) BS07 XP8 2.8.4.1 GO:0005737 ... P11558 20707311
    96964 3m2v:E (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96965 3m2v:E (1.8) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96966 3m2v:E (1.8) BS03 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96967 3m2v:E (1.8) BS04 XP8 2.8.4.1 GO:0005737 ... P11560 20707311
    96968 3m2v:F (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96969 3m2x:A (1.87) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96970 3m2x:A (1.87) BS02 BEX 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96971 3m2y:A (1.17) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96972 3m2y:A (1.17) BS02 BE0 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=148nM
    96973 3m2y:A (1.17) BS03 BE0 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=148nM
    96974 3m2z:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96975 3m2z:A (1.7) BS02 BFE 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    96976 3m2z:A (1.7) BS03 CO3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=73000000nM
    96977 3m30:A (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96978 3m30:A (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96979 3m30:A (1.45) BS03 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96980 3m30:A (1.45) BS04 XP9 2.8.4.1 GO:0005737 ... P11558 20707311
    96981 3m30:A (1.45) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96982 3m30:A (1.45) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96983 3m30:A (1.45) BS07 XP9 2.8.4.1 GO:0005737 ... P11558 20707311
    96984 3m30:B (1.45) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96985 3m30:B (1.45) BS02 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96986 3m30:B (1.45) BS03 XP9 2.8.4.1 GO:0005737 ... P11560 20707311
    96987 3m30:B (1.45) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96988 3m30:C (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    96989 3m30:D (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96990 3m30:D (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96991 3m30:D (1.45) BS03 XP9 2.8.4.1 GO:0005737 ... P11558 20707311
    96992 3m30:D (1.45) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    96993 3m30:D (1.45) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    96994 3m30:D (1.45) BS06 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    96995 3m30:D (1.45) BS07 XP9 2.8.4.1 GO:0005737 ... P11558 20707311
    96996 3m30:E (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96997 3m30:E (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    96998 3m30:E (1.45) BS03 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    96999 3m30:E (1.45) BS04 XP9 2.8.4.1 GO:0005737 ... P11560 20707311
    97000 3m30:F (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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