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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    92601 3jcu:b (3.2) BS16 CLA ? GO:0009507 ... P04160 27251276
    92602 3jcu:b (3.2) BS17 CLA ? GO:0009507 ... P04160 27251276
    92603 3jcu:b (3.2) BS18 CLA ? GO:0009507 ... P04160 27251276
    92604 3jcu:c (3.2) BS01 OEX ? GO:0005737 ... P06003 27251276
    92605 3jcu:c (3.2) BS02 CLA ? GO:0005737 ... P06003 27251276
    92606 3jcu:c (3.2) BS03 CLA ? GO:0005737 ... P06003 27251276
    92607 3jcu:c (3.2) BS04 CLA ? GO:0005737 ... P06003 27251276
    92608 3jcu:c (3.2) BS05 CLA ? GO:0005737 ... P06003 27251276
    92609 3jcu:c (3.2) BS06 CLA ? GO:0005737 ... P06003 27251276
    92610 3jcu:c (3.2) BS07 CLA ? GO:0005737 ... P06003 27251276
    92611 3jcu:c (3.2) BS08 CLA ? GO:0005737 ... P06003 27251276
    92612 3jcu:c (3.2) BS09 CLA ? GO:0005737 ... P06003 27251276
    92613 3jcu:c (3.2) BS10 CLA ? GO:0005737 ... P06003 27251276
    92614 3jcu:c (3.2) BS11 CLA ? GO:0005737 ... P06003 27251276
    92615 3jcu:c (3.2) BS12 CLA ? GO:0005737 ... P06003 27251276
    92616 3jcu:c (3.2) BS13 CLA ? GO:0005737 ... P06003 27251276
    92617 3jcu:c (3.2) BS14 CLA ? GO:0005737 ... P06003 27251276
    92618 3jcu:d (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P06005 27251276
    92619 3jcu:d (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92620 3jcu:d (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92621 3jcu:d (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P06005 27251276
    92622 3jcu:d (3.2) BS05 PHO 1.10.3.9 GO:0005506 ... P06005 27251276
    92623 3jcu:d (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92624 3jcu:d (3.2) BS07 BCT 1.10.3.9 GO:0005506 ... P06005 27251276
    92625 3jcu:d (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92626 3jcu:d (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92627 3jcu:e (3.2) BS01 peptide ? GO:0005506 ... P69383 27251276
    92628 3jcu:e (3.2) BS02 HEM ? GO:0005506 ... P69383 27251276
    92629 3jcu:f (3.2) BS01 HEM ? GO:0005506 ... P60128 27251276
    92630 3jcu:g (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    92631 3jcu:g (3.2) BS02 CLA ? GO:0009416 ... P12333 27251276
    92632 3jcu:g (3.2) BS03 CLA ? GO:0009416 ... P12333 27251276
    92633 3jcu:g (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    92634 3jcu:g (3.2) BS05 CHL ? GO:0009416 ... P12333 27251276
    92635 3jcu:g (3.2) BS06 CHL ? GO:0009416 ... P12333 27251276
    92636 3jcu:g (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    92637 3jcu:g (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    92638 3jcu:g (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    92639 3jcu:g (3.2) BS10 CLA ? GO:0009416 ... P12333 27251276
    92640 3jcu:g (3.2) BS11 CLA ? GO:0009416 ... P12333 27251276
    92641 3jcu:g (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    92642 3jcu:g (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    92643 3jcu:g (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    92644 3jcu:g (3.2) BS15 CHL ? GO:0009416 ... P12333 27251276
    92645 3jcu:g (3.2) BS16 CHL ? GO:0009416 ... P12333 27251276
    92646 3jcu:h (3.2) BS01 CLA ? GO:0009507 ... P05146 27251276
    92647 3jcu:h (3.2) BS02 CLA ? GO:0009507 ... P05146 27251276
    92648 3jcu:h (3.2) BS03 CLA ? GO:0009507 ... P05146 27251276
    92649 3jcu:h (3.2) BS04 CLA ? GO:0009507 ... P05146 27251276
    92650 3jcu:i (3.2) BS01 CLA ? GO:0005737 ... P62103 27251276
    92651 3jcu:i (3.2) BS02 CLA ? GO:0005737 ... P62103 27251276
    92652 3jcu:k (3.2) BS01 CLA ? GO:0005737 ... P12163 27251276
    92653 3jcu:k (3.2) BS02 CLA ? GO:0005737 ... P12163 27251276
    92654 3jcu:k (3.2) BS03 CLA ? GO:0005737 ... P12163 27251276
    92655 3jcu:n (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    92656 3jcu:n (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    92657 3jcu:n (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    92658 3jcu:n (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    92659 3jcu:n (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    92660 3jcu:n (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    92661 3jcu:n (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    92662 3jcu:n (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    92663 3jcu:n (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    92664 3jcu:n (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    92665 3jcu:n (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    92666 3jcu:n (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    92667 3jcu:n (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    92668 3jcu:n (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    92669 3jcu:n (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    92670 3jcu:n (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    92671 3jcu:r (3.2) BS01 CHL ? GO:0009416 ... F2Z293 27251276
    92672 3jcu:r (3.2) BS02 CLA ? GO:0009416 ... F2Z293 27251276
    92673 3jcu:r (3.2) BS03 CLA ? GO:0009416 ... F2Z293 27251276
    92674 3jcu:r (3.2) BS04 CLA ? GO:0009416 ... F2Z293 27251276
    92675 3jcu:r (3.2) BS05 CLA ? GO:0009416 ... F2Z293 27251276
    92676 3jcu:r (3.2) BS06 CHL ? GO:0009416 ... F2Z293 27251276
    92677 3jcu:r (3.2) BS07 CHL ? GO:0009416 ... F2Z293 27251276
    92678 3jcu:r (3.2) BS08 CHL ? GO:0009416 ... F2Z293 27251276
    92679 3jcu:r (3.2) BS09 CLA ? GO:0009416 ... F2Z293 27251276
    92680 3jcu:r (3.2) BS10 CLA ? GO:0009416 ... F2Z293 27251276
    92681 3jcu:r (3.2) BS11 CLA ? GO:0009416 ... F2Z293 27251276
    92682 3jcu:r (3.2) BS12 CLA ? GO:0009416 ... F2Z293 27251276
    92683 3jcu:r (3.2) BS13 CLA ? GO:0009416 ... F2Z293 27251276
    92684 3jcu:r (3.2) BS14 CLA ? GO:0009416 ... F2Z293 27251276
    92685 3jcu:s (3.2) BS01 CLA N/A GO:0009765 ... N/A 27251276
    92686 3jcu:s (3.2) BS02 CHL N/A GO:0009765 ... N/A 27251276
    92687 3jcu:s (3.2) BS03 CHL N/A GO:0009765 ... N/A 27251276
    92688 3jcu:s (3.2) BS04 CLA N/A GO:0009765 ... N/A 27251276
    92689 3jcu:s (3.2) BS05 CLA N/A GO:0009765 ... N/A 27251276
    92690 3jcu:s (3.2) BS06 CLA N/A GO:0009765 ... N/A 27251276
    92691 3jcu:s (3.2) BS07 CHL N/A GO:0009765 ... N/A 27251276
    92692 3jcu:s (3.2) BS08 CHL N/A GO:0009765 ... N/A 27251276
    92693 3jcu:s (3.2) BS09 CHL N/A GO:0009765 ... N/A 27251276
    92694 3jcu:s (3.2) BS10 CLA N/A GO:0009765 ... N/A 27251276
    92695 3jcu:s (3.2) BS11 CLA N/A GO:0009765 ... N/A 27251276
    92696 3jcu:s (3.2) BS12 CLA N/A GO:0009765 ... N/A 27251276
    92697 3jcu:s (3.2) BS13 CLA N/A GO:0009765 ... N/A 27251276
    92698 3jcu:s (3.2) BS14 CLA N/A GO:0009765 ... N/A 27251276
    92699 3jcu:s (3.2) BS15 CLA N/A GO:0009765 ... N/A 27251276
    92700 3jcu:w (3.2) BS01 CLA ? GO:0009507 ... Q41387 27251276
    92701 3jcu:y (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    92702 3jcu:y (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    92703 3jcu:y (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    92704 3jcu:y (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    92705 3jcu:y (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    92706 3jcu:y (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    92707 3jcu:y (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    92708 3jcu:y (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    92709 3jcu:y (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    92710 3jcu:y (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    92711 3jcu:y (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    92712 3jcu:y (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    92713 3jcu:y (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    92714 3jcu:y (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    92715 3jcu:y (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    92716 3jcu:y (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    92717 3jcu:z (3.2) BS01 CLA ? GO:0009507 ... Q9M3M6 27251276
    92718 3jd0:A (3.47) BS01 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92719 3jd0:B (3.47) BS01 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92720 3jd0:C (3.47) BS01 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92721 3jd0:D (3.47) BS01 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92722 3jd0:E (3.47) BS01 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92723 3jd0:F (3.47) BS01 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92724 3jd1:A (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92725 3jd1:A (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92726 3jd1:A (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92727 3jd1:B (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92728 3jd1:B (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92729 3jd1:B (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92730 3jd1:C (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92731 3jd1:C (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92732 3jd1:C (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92733 3jd1:D (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92734 3jd1:D (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92735 3jd1:D (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92736 3jd1:E (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92737 3jd1:E (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92738 3jd1:E (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92739 3jd1:F (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92740 3jd1:F (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92741 3jd1:F (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92742 3jd2:A (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92743 3jd2:A (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92744 3jd2:A (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92745 3jd2:B (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92746 3jd2:B (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92747 3jd2:B (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92748 3jd2:C (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92749 3jd2:C (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92750 3jd2:C (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92751 3jd2:D (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92752 3jd2:D (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92753 3jd2:D (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92754 3jd2:E (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92755 3jd2:E (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92756 3jd2:E (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92757 3jd2:F (3.3) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92758 3jd2:F (3.3) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92759 3jd2:F (3.3) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92760 3jd3:A (3.6) BS01 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92761 3jd3:A (3.6) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92762 3jd3:A (3.6) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92763 3jd3:A (3.6) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92764 3jd3:B (3.6) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92765 3jd3:B (3.6) BS02 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92766 3jd3:B (3.6) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92767 3jd3:B (3.6) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92768 3jd3:C (3.6) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92769 3jd3:C (3.6) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92770 3jd3:C (3.6) BS03 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92771 3jd3:C (3.6) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92772 3jd3:D (3.6) BS01 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92773 3jd3:D (3.6) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92774 3jd3:D (3.6) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92775 3jd3:D (3.6) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92776 3jd3:E (3.6) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92777 3jd3:E (3.6) BS02 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92778 3jd3:E (3.6) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92779 3jd3:E (3.6) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92780 3jd3:F (3.6) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92781 3jd3:F (3.6) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92782 3jd3:F (3.6) BS03 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92783 3jd3:F (3.6) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92784 3jd4:A (3.4) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92785 3jd4:A (3.4) BS02 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92786 3jd4:A (3.4) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92787 3jd4:A (3.4) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92788 3jd4:B (3.4) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92789 3jd4:B (3.4) BS02 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92790 3jd4:B (3.4) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92791 3jd4:B (3.4) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92792 3jd4:C (3.4) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92793 3jd4:C (3.4) BS02 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92794 3jd4:C (3.4) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92795 3jd4:C (3.4) BS04 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92796 3jd4:D (3.4) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92797 3jd4:D (3.4) BS02 GTP 1.4.1.3 GO:0004352 ... P00366 27036132
    92798 3jd4:D (3.4) BS03 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92799 3jd4:D (3.4) BS04 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    92800 3jd4:E (3.4) BS01 NAI 1.4.1.3 GO:0004352 ... P00366 27036132
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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