Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    92401 3jct:d (3.08) BS01 rna ? GO:0002181 ... P0C2H8 27251291
    92402 3jct:e (3.08) BS01 rna ? GO:0002181 ... P38061 27251291
    92403 3jct:f (3.08) BS01 rna ? GO:0000027 ... P05744 27251291
    92404 3jct:g (3.08) BS01 rna ? GO:0002181 ... P87262 27251291
    92405 3jct:h (3.08) BS01 rna ? GO:0000463 ... P0CX84 27251291
    92406 3jct:h (3.08) BS02 rna ? GO:0000463 ... P0CX84 27251291
    92407 3jct:i (3.08) BS01 rna ? GO:0002181 ... P05745 27251291
    92408 3jct:j (3.08) BS01 rna ? GO:0000448 ... P49166 27251291
    92409 3jct:j (3.08) BS02 rna ? GO:0000448 ... P49166 27251291
    92410 3jct:j (3.08) BS03 ZN ? GO:0000448 ... P49166 27251291
    92411 3jct:k (3.08) BS01 rna ? GO:0002181 ... P49167 27251291
    92412 3jct:l (3.08) BS01 rna ? GO:0002181 ... P04650 27251291
    92413 3jct:l (3.08) BS02 rna ? GO:0002181 ... P04650 27251291
    92414 3jct:m (3.08) BS01 rna ? GO:0000055 ... P53742 27251291
    92415 3jct:m (3.08) BS02 GTP ? GO:0000055 ... P53742 27251291
    92416 3jct:n (3.08) BS01 rna ? GO:0000462 ... P53261 27251291
    92417 3jct:n (3.08) BS02 rna ? GO:0000462 ... P53261 27251291
    92418 3jct:o (3.08) BS01 rna ? GO:0000463 ... P53927 27251291
    92419 3jct:p (3.08) BS01 rna ? GO:0002181 ... P0CX25 27251291
    92420 3jct:q (3.08) BS01 rna ? GO:0000027 ... Q12080 27251291
    92421 3jct:q (3.08) BS02 rna ? GO:0000027 ... Q12080 27251291
    92422 3jct:r (3.08) BS01 rna ? GO:0000460 ... P40078 27251291
    92423 3jct:s (3.08) BS01 rna ? GO:0000055 ... P40010 27251291
    92424 3jct:t (3.08) BS01 rna ? GO:0000463 ... P40693 27251291
    92425 3jct:t (3.08) BS02 rna ? GO:0000463 ... P40693 27251291
    92426 3jct:t (3.08) BS03 rna ? GO:0000463 ... P40693 27251291
    92427 3jct:u (3.08) BS01 rna ? GO:0001671 ... Q07915 27251291
    92428 3jct:u (3.08) BS02 ZN ? GO:0001671 ... Q07915 27251291
    92429 3jct:v (3.08) BS01 rna ? GO:0000027 ... P36160 27251291
    92430 3jct:v (3.08) BS02 rna ? GO:0000027 ... P36160 27251291
    92431 3jct:w (3.08) BS01 rna ? GO:0000055 ... Q08746 27251291
    92432 3jct:y (3.08) BS01 rna ? GO:0000054 ... Q12522 27251291
    92433 3jct:z (3.08) BS01 rna ? GO:0003674 ... P38202 27251291
    92434 3jcu:A (3.2) BS01 OEX 1.10.3.9 GO:0005506 ... P69560 27251276
    92435 3jcu:A (3.2) BS02 FE2 1.10.3.9 GO:0005506 ... P69560 27251276
    92436 3jcu:A (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92437 3jcu:A (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92438 3jcu:A (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92439 3jcu:A (3.2) BS06 PHO 1.10.3.9 GO:0005506 ... P69560 27251276
    92440 3jcu:A (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... P69560 27251276
    92441 3jcu:A (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92442 3jcu:A (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92443 3jcu:A (3.2) BS10 BCT 1.10.3.9 GO:0005506 ... P69560 27251276
    92444 3jcu:B (3.2) BS01 peptide ? GO:0009507 ... P04160 27251276
    92445 3jcu:B (3.2) BS02 CLA ? GO:0009507 ... P04160 27251276
    92446 3jcu:B (3.2) BS03 CLA ? GO:0009507 ... P04160 27251276
    92447 3jcu:B (3.2) BS04 CLA ? GO:0009507 ... P04160 27251276
    92448 3jcu:B (3.2) BS05 CLA ? GO:0009507 ... P04160 27251276
    92449 3jcu:B (3.2) BS06 CLA ? GO:0009507 ... P04160 27251276
    92450 3jcu:B (3.2) BS07 CLA ? GO:0009507 ... P04160 27251276
    92451 3jcu:B (3.2) BS08 CLA ? GO:0009507 ... P04160 27251276
    92452 3jcu:B (3.2) BS09 CLA ? GO:0009507 ... P04160 27251276
    92453 3jcu:B (3.2) BS10 CLA ? GO:0009507 ... P04160 27251276
    92454 3jcu:B (3.2) BS11 CLA ? GO:0009507 ... P04160 27251276
    92455 3jcu:B (3.2) BS12 CLA ? GO:0009507 ... P04160 27251276
    92456 3jcu:B (3.2) BS13 CLA ? GO:0009507 ... P04160 27251276
    92457 3jcu:B (3.2) BS14 CLA ? GO:0009507 ... P04160 27251276
    92458 3jcu:B (3.2) BS15 CLA ? GO:0009507 ... P04160 27251276
    92459 3jcu:B (3.2) BS16 CLA ? GO:0009507 ... P04160 27251276
    92460 3jcu:B (3.2) BS17 CLA ? GO:0009507 ... P04160 27251276
    92461 3jcu:B (3.2) BS18 CLA ? GO:0009507 ... P04160 27251276
    92462 3jcu:C (3.2) BS01 OEX ? GO:0005737 ... P06003 27251276
    92463 3jcu:C (3.2) BS02 CLA ? GO:0005737 ... P06003 27251276
    92464 3jcu:C (3.2) BS03 CLA ? GO:0005737 ... P06003 27251276
    92465 3jcu:C (3.2) BS04 CLA ? GO:0005737 ... P06003 27251276
    92466 3jcu:C (3.2) BS05 CLA ? GO:0005737 ... P06003 27251276
    92467 3jcu:C (3.2) BS06 CLA ? GO:0005737 ... P06003 27251276
    92468 3jcu:C (3.2) BS07 CLA ? GO:0005737 ... P06003 27251276
    92469 3jcu:C (3.2) BS08 CLA ? GO:0005737 ... P06003 27251276
    92470 3jcu:C (3.2) BS09 CLA ? GO:0005737 ... P06003 27251276
    92471 3jcu:C (3.2) BS10 CLA ? GO:0005737 ... P06003 27251276
    92472 3jcu:C (3.2) BS11 CLA ? GO:0005737 ... P06003 27251276
    92473 3jcu:C (3.2) BS12 CLA ? GO:0005737 ... P06003 27251276
    92474 3jcu:C (3.2) BS13 CLA ? GO:0005737 ... P06003 27251276
    92475 3jcu:C (3.2) BS14 CLA ? GO:0005737 ... P06003 27251276
    92476 3jcu:D (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P06005 27251276
    92477 3jcu:D (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92478 3jcu:D (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92479 3jcu:D (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P06005 27251276
    92480 3jcu:D (3.2) BS05 PHO 1.10.3.9 GO:0005506 ... P06005 27251276
    92481 3jcu:D (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92482 3jcu:D (3.2) BS07 BCT 1.10.3.9 GO:0005506 ... P06005 27251276
    92483 3jcu:D (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92484 3jcu:D (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    92485 3jcu:E (3.2) BS01 peptide ? GO:0005506 ... P69383 27251276
    92486 3jcu:E (3.2) BS02 HEM ? GO:0005506 ... P69383 27251276
    92487 3jcu:F (3.2) BS01 HEM ? GO:0005506 ... P60128 27251276
    92488 3jcu:G (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    92489 3jcu:G (3.2) BS02 CLA ? GO:0009416 ... P12333 27251276
    92490 3jcu:G (3.2) BS03 CLA ? GO:0009416 ... P12333 27251276
    92491 3jcu:G (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    92492 3jcu:G (3.2) BS05 CHL ? GO:0009416 ... P12333 27251276
    92493 3jcu:G (3.2) BS06 CHL ? GO:0009416 ... P12333 27251276
    92494 3jcu:G (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    92495 3jcu:G (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    92496 3jcu:G (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    92497 3jcu:G (3.2) BS10 CLA ? GO:0009416 ... P12333 27251276
    92498 3jcu:G (3.2) BS11 CLA ? GO:0009416 ... P12333 27251276
    92499 3jcu:G (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    92500 3jcu:G (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    92501 3jcu:G (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    92502 3jcu:G (3.2) BS15 CHL ? GO:0009416 ... P12333 27251276
    92503 3jcu:G (3.2) BS16 CHL ? GO:0009416 ... P12333 27251276
    92504 3jcu:H (3.2) BS01 CLA ? GO:0009507 ... P05146 27251276
    92505 3jcu:H (3.2) BS02 CLA ? GO:0009507 ... P05146 27251276
    92506 3jcu:H (3.2) BS03 CLA ? GO:0009507 ... P05146 27251276
    92507 3jcu:H (3.2) BS04 CLA ? GO:0009507 ... P05146 27251276
    92508 3jcu:I (3.2) BS01 CLA ? GO:0005737 ... P62103 27251276
    92509 3jcu:I (3.2) BS02 CLA ? GO:0005737 ... P62103 27251276
    92510 3jcu:K (3.2) BS01 CLA ? GO:0005737 ... P12163 27251276
    92511 3jcu:K (3.2) BS02 CLA ? GO:0005737 ... P12163 27251276
    92512 3jcu:K (3.2) BS03 CLA ? GO:0005737 ... P12163 27251276
    92513 3jcu:N (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    92514 3jcu:N (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    92515 3jcu:N (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    92516 3jcu:N (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    92517 3jcu:N (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    92518 3jcu:N (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    92519 3jcu:N (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    92520 3jcu:N (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    92521 3jcu:N (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    92522 3jcu:N (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    92523 3jcu:N (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    92524 3jcu:N (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    92525 3jcu:N (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    92526 3jcu:N (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    92527 3jcu:N (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    92528 3jcu:N (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    92529 3jcu:R (3.2) BS01 CLA ? GO:0009416 ... F2Z293 27251276
    92530 3jcu:R (3.2) BS02 CLA ? GO:0009416 ... F2Z293 27251276
    92531 3jcu:R (3.2) BS03 CLA ? GO:0009416 ... F2Z293 27251276
    92532 3jcu:R (3.2) BS04 CLA ? GO:0009416 ... F2Z293 27251276
    92533 3jcu:R (3.2) BS05 CHL ? GO:0009416 ... F2Z293 27251276
    92534 3jcu:R (3.2) BS06 CHL ? GO:0009416 ... F2Z293 27251276
    92535 3jcu:R (3.2) BS07 CHL ? GO:0009416 ... F2Z293 27251276
    92536 3jcu:R (3.2) BS08 CLA ? GO:0009416 ... F2Z293 27251276
    92537 3jcu:R (3.2) BS09 CLA ? GO:0009416 ... F2Z293 27251276
    92538 3jcu:R (3.2) BS10 CLA ? GO:0009416 ... F2Z293 27251276
    92539 3jcu:R (3.2) BS11 CLA ? GO:0009416 ... F2Z293 27251276
    92540 3jcu:R (3.2) BS12 CLA ? GO:0009416 ... F2Z293 27251276
    92541 3jcu:R (3.2) BS13 CLA ? GO:0009416 ... F2Z293 27251276
    92542 3jcu:R (3.2) BS14 CHL ? GO:0009416 ... F2Z293 27251276
    92543 3jcu:S (3.2) BS01 CLA N/A GO:0009765 ... N/A 27251276
    92544 3jcu:S (3.2) BS02 CHL N/A GO:0009765 ... N/A 27251276
    92545 3jcu:S (3.2) BS03 CHL N/A GO:0009765 ... N/A 27251276
    92546 3jcu:S (3.2) BS04 CLA N/A GO:0009765 ... N/A 27251276
    92547 3jcu:S (3.2) BS05 CLA N/A GO:0009765 ... N/A 27251276
    92548 3jcu:S (3.2) BS06 CLA N/A GO:0009765 ... N/A 27251276
    92549 3jcu:S (3.2) BS07 CHL N/A GO:0009765 ... N/A 27251276
    92550 3jcu:S (3.2) BS08 CHL N/A GO:0009765 ... N/A 27251276
    92551 3jcu:S (3.2) BS09 CHL N/A GO:0009765 ... N/A 27251276
    92552 3jcu:S (3.2) BS10 CLA N/A GO:0009765 ... N/A 27251276
    92553 3jcu:S (3.2) BS11 CLA N/A GO:0009765 ... N/A 27251276
    92554 3jcu:S (3.2) BS12 CLA N/A GO:0009765 ... N/A 27251276
    92555 3jcu:S (3.2) BS13 CLA N/A GO:0009765 ... N/A 27251276
    92556 3jcu:S (3.2) BS14 CLA N/A GO:0009765 ... N/A 27251276
    92557 3jcu:S (3.2) BS15 CLA N/A GO:0009765 ... N/A 27251276
    92558 3jcu:W (3.2) BS01 CLA ? GO:0009507 ... Q41387 27251276
    92559 3jcu:Y (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    92560 3jcu:Y (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    92561 3jcu:Y (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    92562 3jcu:Y (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    92563 3jcu:Y (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    92564 3jcu:Y (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    92565 3jcu:Y (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    92566 3jcu:Y (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    92567 3jcu:Y (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    92568 3jcu:Y (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    92569 3jcu:Y (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    92570 3jcu:Y (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    92571 3jcu:Y (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    92572 3jcu:Y (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    92573 3jcu:Y (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    92574 3jcu:Y (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    92575 3jcu:Z (3.2) BS01 CLA ? GO:0009507 ... Q9M3M6 27251276
    92576 3jcu:a (3.2) BS01 OEX 1.10.3.9 GO:0005506 ... P69560 27251276
    92577 3jcu:a (3.2) BS02 FE2 1.10.3.9 GO:0005506 ... P69560 27251276
    92578 3jcu:a (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92579 3jcu:a (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92580 3jcu:a (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92581 3jcu:a (3.2) BS06 PHO 1.10.3.9 GO:0005506 ... P69560 27251276
    92582 3jcu:a (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... P69560 27251276
    92583 3jcu:a (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92584 3jcu:a (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    92585 3jcu:a (3.2) BS10 BCT 1.10.3.9 GO:0005506 ... P69560 27251276
    92586 3jcu:b (3.2) BS01 peptide ? GO:0009507 ... P04160 27251276
    92587 3jcu:b (3.2) BS02 CLA ? GO:0009507 ... P04160 27251276
    92588 3jcu:b (3.2) BS03 CLA ? GO:0009507 ... P04160 27251276
    92589 3jcu:b (3.2) BS04 CLA ? GO:0009507 ... P04160 27251276
    92590 3jcu:b (3.2) BS05 CLA ? GO:0009507 ... P04160 27251276
    92591 3jcu:b (3.2) BS06 CLA ? GO:0009507 ... P04160 27251276
    92592 3jcu:b (3.2) BS07 CLA ? GO:0009507 ... P04160 27251276
    92593 3jcu:b (3.2) BS08 CLA ? GO:0009507 ... P04160 27251276
    92594 3jcu:b (3.2) BS09 CLA ? GO:0009507 ... P04160 27251276
    92595 3jcu:b (3.2) BS10 CLA ? GO:0009507 ... P04160 27251276
    92596 3jcu:b (3.2) BS11 CLA ? GO:0009507 ... P04160 27251276
    92597 3jcu:b (3.2) BS12 CLA ? GO:0009507 ... P04160 27251276
    92598 3jcu:b (3.2) BS13 CLA ? GO:0009507 ... P04160 27251276
    92599 3jcu:b (3.2) BS14 CLA ? GO:0009507 ... P04160 27251276
    92600 3jcu:b (3.2) BS15 CLA ? GO:0009507 ... P04160 27251276
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417