Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    92201 3jcn:F (4.6) BS01 rna ? GO:0000027 ... P62399 26973877
    92202 3jcn:F (4.6) BS02 rna ? GO:0000027 ... P62399 26973877
    92203 3jcn:G (4.6) BS01 rna ? GO:0000027 ... P0AG55 26973877
    92204 3jcn:H (4.6) BS01 rna ? GO:0002181 ... P0A7R1 26973877
    92205 3jcn:I (4.6) BS01 rna ? GO:0000027 ... P0A7J7 26973877
    92206 3jcn:J (4.6) BS01 rna ? GO:0002181 ... P0AA10 26973877
    92207 3jcn:K (4.6) BS01 rna ? GO:0002181 ... P0ADY3 26973877
    92208 3jcn:K (4.6) BS02 rna ? GO:0002181 ... P0ADY3 26973877
    92209 3jcn:L (4.6) BS01 rna ? GO:0002181 ... P02413 26973877
    92210 3jcn:M (4.6) BS01 rna ? GO:0000027 ... P0ADY7 26973877
    92211 3jcn:M (4.6) BS02 rna ? GO:0000027 ... P0ADY7 26973877
    92212 3jcn:N (4.6) BS01 rna ? GO:0000027 ... P0AG44 26973877
    92213 3jcn:O (4.6) BS01 rna ? GO:0002181 ... P0C018 26973877
    92214 3jcn:O (4.6) BS02 rna ? GO:0002181 ... P0C018 26973877
    92215 3jcn:P (4.6) BS01 rna ? GO:0000027 ... P0A7K6 26973877
    92216 3jcn:P (4.6) BS02 rna ? GO:0000027 ... P0A7K6 26973877
    92217 3jcn:Q (4.6) BS01 rna ? GO:0000027 ... P0A7L3 26973877
    92218 3jcn:R (4.6) BS01 rna ? GO:0002181 ... P0AG48 26973877
    92219 3jcn:S (4.6) BS01 rna ? GO:0002181 ... P61175 26973877
    92220 3jcn:T (4.6) BS01 rna ? GO:0000027 ... P0ADZ0 26973877
    92221 3jcn:U (4.6) BS01 rna ? GO:0000027 ... P60624 26973877
    92222 3jcn:V (4.6) BS01 rna ? GO:0000027 ... P68919 26973877
    92223 3jcn:V (4.6) BS02 rna ? GO:0000027 ... P68919 26973877
    92224 3jcn:W (4.6) BS01 rna ? GO:0000027 ... P0A7L8 26973877
    92225 3jcn:W (4.6) BS02 rna ? GO:0000027 ... P0A7L8 26973877
    92226 3jcn:X (4.6) BS01 rna ? GO:0000027 ... P0A7M2 26973877
    92227 3jcn:Y (4.6) BS01 rna ? GO:0000027 ... P0A7M6 26973877
    92228 3jcn:Z (4.6) BS01 rna ? GO:0000027 ... P0AG51 26973877
    92229 3jcn:b (4.6) BS01 rna ? GO:0003743 ... P0A705 26973877
    92230 3jcn:b (4.6) BS02 rna ? GO:0003743 ... P0A705 26973877
    92231 3jcn:b (4.6) BS03 rna ? GO:0003743 ... P0A705 26973877
    92232 3jcn:b (4.6) BS04 GNP ? GO:0003743 ... P0A705 26973877
    92233 3jcn:b (4.6) BS05 FME ? GO:0003743 ... P0A705 26973877
    92234 3jcn:c (4.6) BS01 rna ? GO:0000028 ... P0A7V3 26973877
    92235 3jcn:d (4.6) BS01 rna ? GO:0000028 ... P0A7V0 26973877
    92236 3jcn:f (4.6) BS01 rna ? GO:0000028 ... P0A7W1 26973877
    92237 3jcn:g (4.6) BS01 rna ? GO:0000028 ... P0A7V8 26973877
    92238 3jcn:h (4.6) BS01 rna ? GO:0000028 ... P02359 26973877
    92239 3jcn:i (4.6) BS01 rna ? GO:0002181 ... P02358 26973877
    92240 3jcn:j (4.6) BS01 rna ? GO:0000049 ... P0A7X3 26973877
    92241 3jcn:k (4.6) BS01 rna ? GO:0000028 ... P0A7W7 26973877
    92242 3jcn:l (4.6) BS01 rna ? GO:0002181 ... P0A7R9 26973877
    92243 3jcn:m (4.6) BS01 rna ? GO:0000049 ... P0A7R5 26973877
    92244 3jcn:n (4.6) BS01 rna ? GO:0000049 ... P0A7S9 26973877
    92245 3jcn:o (4.6) BS01 rna ? GO:0000049 ... P0A7S3 26973877
    92246 3jcn:p (4.6) BS01 rna ? GO:0000028 ... P0ADZ4 26973877
    92247 3jcn:p (4.6) BS02 rna ? GO:0000028 ... P0ADZ4 26973877
    92248 3jcn:q (4.6) BS01 rna ? GO:0000028 ... P0AG59 26973877
    92249 3jcn:r (4.6) BS01 rna ? GO:0000028 ... P0AG63 26973877
    92250 3jcn:s (4.6) BS01 rna ? GO:0000028 ... P0A7T3 26973877
    92251 3jcn:t (4.6) BS01 rna ? GO:0000028 ... P0A7U3 26973877
    92252 3jcn:u (4.6) BS01 rna ? GO:0002181 ... P0A7T7 26973877
    92253 3jcn:w (4.6) BS01 rna ? GO:0000028 ... P68679 26973877
    92254 3jcn:x (4.6) BS01 rna ? GO:0000028 ... P0A7U7 26973877
    92255 3jcs:A (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    92256 3jcs:A (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    92257 3jcs:A (2.8) BS03 rna N/A GO:0003735 ... N/A 27373148
    92258 3jcs:B (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    92259 3jcs:B (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    92260 3jcs:B (2.8) BS03 rna N/A GO:0003735 ... N/A 27373148
    92261 3jcs:B (2.8) BS04 rna N/A GO:0003735 ... N/A 27373148
    92262 3jcs:C (2.8) BS01 rna ? GO:0003723 ... A0A3S5H7L0 27373148
    92263 3jcs:C (2.8) BS02 rna ? GO:0003723 ... A0A3S5H7L0 27373148
    92264 3jcs:C (2.8) BS03 rna ? GO:0003723 ... A0A3S5H7L0 27373148
    92265 3jcs:D (2.8) BS01 rna ? GO:0003723 ... A0A3S5H5A8 27373148
    92266 3jcs:D (2.8) BS02 rna ? GO:0003723 ... A0A3S5H5A8 27373148
    92267 3jcs:E (2.8) BS01 rna ? GO:0002181 ... A0A3S7WWL2 27373148
    92268 3jcs:E (2.8) BS02 rna ? GO:0002181 ... A0A3S7WWL2 27373148
    92269 3jcs:E (2.8) BS03 rna ? GO:0002181 ... A0A3S7WWL2 27373148
    92270 3jcs:F (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    92271 3jcs:F (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    92272 3jcs:G (2.8) BS01 rna ? GO:0000470 ... E9B949 27373148
    92273 3jcs:G (2.8) BS02 rna ? GO:0000470 ... E9B949 27373148
    92274 3jcs:G (2.8) BS03 rna ? GO:0000470 ... E9B949 27373148
    92275 3jcs:H (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    92276 3jcs:H (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    92277 3jcs:H (2.8) BS03 rna N/A GO:0003735 ... N/A 27373148
    92278 3jcs:H (2.8) BS04 rna N/A GO:0003735 ... N/A 27373148
    92279 3jcs:I (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    92280 3jcs:I (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    92281 3jcs:J (2.8) BS01 rna ? GO:0003735 ... A0A3Q8IIA7 27373148
    92282 3jcs:J (2.8) BS02 rna ? GO:0003735 ... A0A3Q8IIA7 27373148
    92283 3jcs:K (2.8) BS01 rna ? GO:0003723 ... E9BG02 27373148
    92284 3jcs:K (2.8) BS02 rna ? GO:0003723 ... E9BG02 27373148
    92285 3jcs:L (2.8) BS01 rna ? GO:0003735 ... A0A3Q8IGI9 27373148
    92286 3jcs:L (2.8) BS02 rna ? GO:0003735 ... A0A3Q8IGI9 27373148
    92287 3jcs:M (2.8) BS01 rna ? GO:0002181 ... E9BMB4 27373148
    92288 3jcs:M (2.8) BS02 rna ? GO:0002181 ... E9BMB4 27373148
    92289 3jcs:M (2.8) BS03 rna ? GO:0002181 ... E9BMB4 27373148
    92290 3jcs:M (2.8) BS04 MG ? GO:0002181 ... E9BMB4 27373148
    92291 3jcs:N (2.8) BS01 rna ? GO:0000027 ... A0A3S5H5C4 27373148
    92292 3jcs:N (2.8) BS02 rna ? GO:0000027 ... A0A3S5H5C4 27373148
    92293 3jcs:N (2.8) BS03 rna ? GO:0000027 ... A0A3S5H5C4 27373148
    92294 3jcs:O (2.8) BS01 rna ? GO:0000027 ... A0A3Q8IJC5 27373148
    92295 3jcs:O (2.8) BS02 rna ? GO:0000027 ... A0A3Q8IJC5 27373148
    92296 3jcs:O (2.8) BS03 rna ? GO:0000027 ... A0A3Q8IJC5 27373148
    92297 3jcs:P (2.8) BS01 rna ? GO:0003723 ... A0A3S7XBN1 27373148
    92298 3jcs:P (2.8) BS02 rna ? GO:0003723 ... A0A3S7XBN1 27373148
    92299 3jcs:Q (2.8) BS01 rna ? GO:0003723 ... E9B8Q2 27373148
    92300 3jcs:Q (2.8) BS02 rna ? GO:0003723 ... E9B8Q2 27373148
    92301 3jcs:Q (2.8) BS03 rna ? GO:0003723 ... E9B8Q2 27373148
    92302 3jcs:Q (2.8) BS04 rna ? GO:0003723 ... E9B8Q2 27373148
    92303 3jcs:R (2.8) BS01 rna ? GO:0003735 ... A0A3Q8II03 27373148
    92304 3jcs:R (2.8) BS02 rna ? GO:0003735 ... A0A3Q8II03 27373148
    92305 3jcs:S (2.8) BS01 rna ? GO:0003735 ... A0A3Q8ICH0 27373148
    92306 3jcs:S (2.8) BS02 rna ? GO:0003735 ... A0A3Q8ICH0 27373148
    92307 3jcs:S (2.8) BS03 rna ? GO:0003735 ... A0A3Q8ICH0 27373148
    92308 3jcs:T (2.8) BS01 rna ? GO:0002181 ... A0A3S7WY02 27373148
    92309 3jcs:T (2.8) BS02 rna ? GO:0002181 ... A0A3S7WY02 27373148
    92310 3jcs:T (2.8) BS03 rna ? GO:0002181 ... A0A3S7WY02 27373148
    92311 3jcs:T (2.8) BS04 rna ? GO:0002181 ... A0A3S7WY02 27373148
    92312 3jcs:U (2.8) BS01 rna ? GO:0002181 ... A0A3Q8IJA8 27373148
    92313 3jcs:V (2.8) BS01 rna ? GO:0000027 ... E9B8R9 27373148
    92314 3jcs:V (2.8) BS02 rna ? GO:0000027 ... E9B8R9 27373148
    92315 3jcs:V (2.8) BS03 rna ? GO:0000027 ... E9B8R9 27373148
    92316 3jcs:W (2.8) BS01 rna N/A GO:0003723 ... N/A 27373148
    92317 3jcs:W (2.8) BS02 rna N/A GO:0003723 ... N/A 27373148
    92318 3jcs:Y (2.8) BS01 rna ? GO:0003735 ... E9BP34 27373148
    92319 3jcs:Y (2.8) BS02 rna ? GO:0003735 ... E9BP34 27373148
    92320 3jcs:Z (2.8) BS01 rna ? GO:0003735 ... A0A3Q8I959 27373148
    92321 3jcs:a (2.8) BS01 rna ? GO:0000463 ... E9BIP6 27373148
    92322 3jcs:a (2.8) BS02 rna ? GO:0000463 ... E9BIP6 27373148
    92323 3jcs:b (2.8) BS01 rna ? GO:0002181 ... E9BU64 27373148
    92324 3jcs:b (2.8) BS02 rna ? GO:0002181 ... E9BU64 27373148
    92325 3jcs:c (2.8) BS01 rna ? GO:0000463 ... E9BI29 27373148
    92326 3jcs:c (2.8) BS02 rna ? GO:0000463 ... E9BI29 27373148
    92327 3jcs:d (2.8) BS01 rna ? GO:0003723 ... A0A3Q8IET6 27373148
    92328 3jcs:d (2.8) BS02 rna ? GO:0003723 ... A0A3Q8IET6 27373148
    92329 3jcs:e (2.8) BS01 rna ? GO:0002181 ... E9BSK4 27373148
    92330 3jcs:e (2.8) BS02 rna ? GO:0002181 ... E9BSK4 27373148
    92331 3jcs:e (2.8) BS03 rna ? GO:0002181 ... E9BSK4 27373148
    92332 3jcs:e (2.8) BS04 rna ? GO:0002181 ... E9BSK4 27373148
    92333 3jcs:f (2.8) BS01 rna ? GO:0003735 ... A0A3Q8IBA2 27373148
    92334 3jcs:g (2.8) BS01 rna ? GO:0002181 ... A0A3Q8II82 27373148
    92335 3jcs:g (2.8) BS02 rna ? GO:0002181 ... A0A3Q8II82 27373148
    92336 3jcs:g (2.8) BS03 rna ? GO:0002181 ... A0A3Q8II82 27373148
    92337 3jcs:h (2.8) BS01 rna ? GO:0003735 ... A0A3Q8IHK2 27373148
    92338 3jcs:h (2.8) BS02 rna ? GO:0003735 ... A0A3Q8IHK2 27373148
    92339 3jcs:h (2.8) BS03 rna ? GO:0003735 ... A0A3Q8IHK2 27373148
    92340 3jcs:i (2.8) BS01 rna ? GO:0002181 ... A0A3Q8IDW6 27373148
    92341 3jcs:i (2.8) BS02 rna ? GO:0002181 ... A0A3Q8IDW6 27373148
    92342 3jcs:j (2.8) BS01 rna ? GO:0003723 ... P62885 27373148
    92343 3jcs:j (2.8) BS02 rna ? GO:0003723 ... P62885 27373148
    92344 3jcs:j (2.8) BS03 rna ? GO:0003723 ... P62885 27373148
    92345 3jcs:k (2.8) BS01 rna ? GO:0003735 ... E9B7P2 27373148
    92346 3jcs:k (2.8) BS02 rna ? GO:0003735 ... E9B7P2 27373148
    92347 3jcs:k (2.8) BS03 rna ? GO:0003735 ... E9B7P2 27373148
    92348 3jcs:l (2.8) BS01 rna ? GO:0003735 ... E9BCX6 27373148
    92349 3jcs:l (2.8) BS02 rna ? GO:0003735 ... E9BCX6 27373148
    92350 3jcs:l (2.8) BS03 rna ? GO:0003735 ... E9BCX6 27373148
    92351 3jcs:m (2.8) BS01 rna ? GO:0003735 ... E9BFK4 27373148
    92352 3jcs:m (2.8) BS02 rna ? GO:0003735 ... E9BFK4 27373148
    92353 3jcs:m (2.8) BS03 rna ? GO:0003735 ... E9BFK4 27373148
    92354 3jcs:n (2.8) BS01 rna ? GO:0003735 ... E9BBL5 27373148
    92355 3jcs:n (2.8) BS02 rna ? GO:0003735 ... E9BBL5 27373148
    92356 3jct:4 (3.08) BS01 rna 3.-.-.- GO:0000055 ... Q03862 27251291
    92357 3jct:4 (3.08) BS02 rna 3.-.-.- GO:0000055 ... Q03862 27251291
    92358 3jct:5 (3.08) BS01 rna ? GO:0003674 ... P53188 27251291
    92359 3jct:5 (3.08) BS02 rna ? GO:0003674 ... P53188 27251291
    92360 3jct:A (3.08) BS01 rna ? GO:0002181 ... P0CX45 27251291
    92361 3jct:B (3.08) BS01 rna ? GO:0000027 ... P14126 27251291
    92362 3jct:C (3.08) BS01 rna ? GO:0002181 ... P10664 27251291
    92363 3jct:C (3.08) BS02 rna ? GO:0002181 ... P10664 27251291
    92364 3jct:D (3.08) BS01 rna ? GO:0000027 ... P26321 27251291
    92365 3jct:D (3.08) BS02 rna ? GO:0000027 ... P26321 27251291
    92366 3jct:E (3.08) BS01 rna ? GO:0000027 ... Q02326 27251291
    92367 3jct:F (3.08) BS01 rna ? GO:0000463 ... P05737 27251291
    92368 3jct:G (3.08) BS01 rna ? GO:0000470 ... P17076 27251291
    92369 3jct:G (3.08) BS02 rna ? GO:0000470 ... P17076 27251291
    92370 3jct:H (3.08) BS01 rna ? GO:0002181 ... P05738 27251291
    92371 3jct:I (3.08) BS01 rna ? GO:0000055 ... Q08004 27251291
    92372 3jct:I (3.08) BS02 ZN ? GO:0000055 ... Q08004 27251291
    92373 3jct:J (3.08) BS01 rna ? GO:0000027 ... P0C0W9 27251291
    92374 3jct:J (3.08) BS02 rna ? GO:0000027 ... P0C0W9 27251291
    92375 3jct:K (3.08) BS01 rna ? GO:0000462 ... P38779 27251291
    92376 3jct:L (3.08) BS01 rna ? GO:0002181 ... Q12690 27251291
    92377 3jct:L (3.08) BS02 rna ? GO:0002181 ... Q12690 27251291
    92378 3jct:M (3.08) BS01 rna ? GO:0000027 ... P36105 27251291
    92379 3jct:N (3.08) BS01 rna ? GO:0002181 ... P05748 27251291
    92380 3jct:N (3.08) BS02 rna ? GO:0002181 ... P05748 27251291
    92381 3jct:O (3.08) BS01 rna ? GO:0000470 ... P26784 27251291
    92382 3jct:P (3.08) BS01 rna ? GO:0000448 ... P05740 27251291
    92383 3jct:P (3.08) BS02 rna ? GO:0000448 ... P05740 27251291
    92384 3jct:Q (3.08) BS01 rna ? GO:0002181 ... P0CX49 27251291
    92385 3jct:R (3.08) BS01 rna ? GO:0002181 ... P0CX82 27251291
    92386 3jct:S (3.08) BS01 rna ? GO:0002181 ... P0CX23 27251291
    92387 3jct:T (3.08) BS01 rna ? GO:0002181 ... Q02753 27251291
    92388 3jct:U (3.08) BS01 rna ? GO:0002181 ... P05749 27251291
    92389 3jct:V (3.08) BS01 rna ? GO:0002181 ... P0CX41 27251291
    92390 3jct:W (3.08) BS01 rna ? GO:0000027 ... P33201 27251291
    92391 3jct:X (3.08) BS01 rna ? GO:0000027 ... P04456 27251291
    92392 3jct:X (3.08) BS02 rna ? GO:0000027 ... P04456 27251291
    92393 3jct:Y (3.08) BS01 rna ? GO:0002181 ... P05743 27251291
    92394 3jct:Y (3.08) BS02 rna ? GO:0002181 ... P05743 27251291
    92395 3jct:Z (3.08) BS01 rna ? GO:0002181 ... P0C2H6 27251291
    92396 3jct:a (3.08) BS01 rna ? GO:0002181 ... P02406 27251291
    92397 3jct:b (3.08) BS01 rna ? GO:0000054 ... Q02892 27251291
    92398 3jct:b (3.08) BS02 rna ? GO:0000054 ... Q02892 27251291
    92399 3jct:b (3.08) BS03 GTP ? GO:0000054 ... Q02892 27251291
    92400 3jct:c (3.08) BS01 rna ? GO:0002181 ... P14120 27251291
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417