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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    92001 3jcd:Q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 26809121
    92002 3jcd:R (3.7) BS01 rna ? GO:0002181 ... P0AG48 26809121
    92003 3jcd:S (3.7) BS01 rna ? GO:0002181 ... P61175 26809121
    92004 3jcd:T (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 26809121
    92005 3jcd:U (3.7) BS01 rna ? GO:0000027 ... P60624 26809121
    92006 3jcd:V (3.7) BS01 rna ? GO:0000027 ... P68919 26809121
    92007 3jcd:V (3.7) BS02 rna ? GO:0000027 ... P68919 26809121
    92008 3jcd:W (3.7) BS01 rna ? GO:0000027 ... P0A7L8 26809121
    92009 3jcd:W (3.7) BS02 rna ? GO:0000027 ... P0A7L8 26809121
    92010 3jcd:X (3.7) BS01 rna ? GO:0000027 ... P0A7M2 26809121
    92011 3jcd:X (3.7) BS02 rna ? GO:0000027 ... P0A7M2 26809121
    92012 3jcd:Y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 26809121
    92013 3jcd:Z (3.7) BS01 rna ? GO:0000027 ... P0AG51 26809121
    92014 3jcd:b (3.7) BS01 rna ? GO:0000028 ... P0A7V0 26809121
    92015 3jcd:c (3.7) BS01 rna ? GO:0000028 ... P0A7V3 26809121
    92016 3jcd:d (3.7) BS01 rna ? GO:0000028 ... P0A7V8 26809121
    92017 3jcd:e (3.7) BS01 rna ? GO:0000028 ... P0A7W1 26809121
    92018 3jcd:f (3.7) BS01 rna ? GO:0002181 ... P02358 26809121
    92019 3jcd:g (3.7) BS01 rna ? GO:0000028 ... P02359 26809121
    92020 3jcd:g (3.7) BS02 rna ? GO:0000028 ... P02359 26809121
    92021 3jcd:h (3.7) BS01 rna ? GO:0000028 ... P0A7W7 26809121
    92022 3jcd:i (3.7) BS01 rna ? GO:0000049 ... P0A7X3 26809121
    92023 3jcd:j (3.7) BS01 rna ? GO:0000049 ... P0A7R5 26809121
    92024 3jcd:k (3.7) BS01 rna ? GO:0002181 ... P0A7R9 26809121
    92025 3jcd:l (3.7) BS01 rna ? GO:0000049 ... P0A7S3 26809121
    92026 3jcd:m (3.7) BS01 rna ? GO:0000049 ... P0A7S9 26809121
    92027 3jcd:m (3.7) BS02 rna ? GO:0000049 ... P0A7S9 26809121
    92028 3jcd:n (3.7) BS01 rna ? GO:0000028 ... P0AG59 26809121
    92029 3jcd:o (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 26809121
    92030 3jcd:o (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 26809121
    92031 3jcd:p (3.7) BS01 rna ? GO:0000028 ... P0A7T3 26809121
    92032 3jcd:q (3.7) BS01 rna ? GO:0000028 ... P0AG63 26809121
    92033 3jcd:r (3.7) BS01 rna ? GO:0002181 ... P0A7T7 26809121
    92034 3jcd:s (3.7) BS01 rna ? GO:0000028 ... P0A7U3 26809121
    92035 3jcd:t (3.7) BS01 rna ? GO:0000028 ... P0A7U7 26809121
    92036 3jcd:u (3.7) BS01 rna ? GO:0000028 ... P68679 26809121
    92037 3jce:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 26809121
    92038 3jce:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 26809121
    92039 3jce:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 26809121
    92040 3jce:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 26809121
    92041 3jce:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 26809121
    92042 3jce:5 (3.2) BS01 rna ? GO:0000027 ... P0A7L0 26809121
    92043 3jce:5 (3.2) BS02 rna ? GO:0000027 ... P0A7L0 26809121
    92044 3jce:C (3.2) BS01 rna ? GO:0000027 ... P60422 26809121
    92045 3jce:C (3.2) BS02 rna ? GO:0000027 ... P60422 26809121
    92046 3jce:D (3.2) BS01 rna ? GO:0000027 ... P60438 26809121
    92047 3jce:E (3.2) BS01 rna ? GO:0001070 ... P60723 26809121
    92048 3jce:F (3.2) BS01 rna ? GO:0000027 ... P62399 26809121
    92049 3jce:F (3.2) BS02 rna ? GO:0000027 ... P62399 26809121
    92050 3jce:F (3.2) BS03 rna ? GO:0000027 ... P62399 26809121
    92051 3jce:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 26809121
    92052 3jce:H (3.2) BS01 rna ? GO:0002181 ... P0A7R1 26809121
    92053 3jce:I (3.2) BS01 rna ? GO:0000027 ... P0A7J7 26809121
    92054 3jce:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 26809121
    92055 3jce:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 26809121
    92056 3jce:K (3.2) BS02 rna ? GO:0002181 ... P0ADY3 26809121
    92057 3jce:L (3.2) BS01 rna ? GO:0002181 ... P02413 26809121
    92058 3jce:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 26809121
    92059 3jce:M (3.2) BS02 rna ? GO:0000027 ... P0ADY7 26809121
    92060 3jce:M (3.2) BS03 rna ? GO:0000027 ... P0ADY7 26809121
    92061 3jce:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 26809121
    92062 3jce:O (3.2) BS01 rna ? GO:0002181 ... P0C018 26809121
    92063 3jce:O (3.2) BS02 rna ? GO:0002181 ... P0C018 26809121
    92064 3jce:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 26809121
    92065 3jce:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 26809121
    92066 3jce:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 26809121
    92067 3jce:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 26809121
    92068 3jce:S (3.2) BS01 rna ? GO:0002181 ... P61175 26809121
    92069 3jce:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 26809121
    92070 3jce:U (3.2) BS01 rna ? GO:0000027 ... P60624 26809121
    92071 3jce:V (3.2) BS01 rna ? GO:0000027 ... P68919 26809121
    92072 3jce:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 26809121
    92073 3jce:X (3.2) BS01 rna ? GO:0000027 ... P0A7M2 26809121
    92074 3jce:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 26809121
    92075 3jce:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 26809121
    92076 3jce:b (3.2) BS01 rna ? GO:0000028 ... P0A7V0 26809121
    92077 3jce:c (3.2) BS01 rna ? GO:0000028 ... P0A7V3 26809121
    92078 3jce:c (3.2) BS02 rna ? GO:0000028 ... P0A7V3 26809121
    92079 3jce:d (3.2) BS01 rna ? GO:0000028 ... P0A7V8 26809121
    92080 3jce:e (3.2) BS01 rna ? GO:0000028 ... P0A7W1 26809121
    92081 3jce:e (3.2) BS02 rna ? GO:0000028 ... P0A7W1 26809121
    92082 3jce:f (3.2) BS01 rna ? GO:0002181 ... P02358 26809121
    92083 3jce:g (3.2) BS01 rna ? GO:0000028 ... P02359 26809121
    92084 3jce:g (3.2) BS02 rna ? GO:0000028 ... P02359 26809121
    92085 3jce:h (3.2) BS01 rna ? GO:0000028 ... P0A7W7 26809121
    92086 3jce:i (3.2) BS01 rna ? GO:0000049 ... P0A7X3 26809121
    92087 3jce:i (3.2) BS02 rna ? GO:0000049 ... P0A7X3 26809121
    92088 3jce:j (3.2) BS01 rna ? GO:0000049 ... P0A7R5 26809121
    92089 3jce:k (3.2) BS01 rna ? GO:0002181 ... P0A7R9 26809121
    92090 3jce:l (3.2) BS01 rna ? GO:0000049 ... P0A7S3 26809121
    92091 3jce:m (3.2) BS01 rna ? GO:0000049 ... P0A7S9 26809121
    92092 3jce:m (3.2) BS02 rna ? GO:0000049 ... P0A7S9 26809121
    92093 3jce:n (3.2) BS01 rna ? GO:0000028 ... P0AG59 26809121
    92094 3jce:o (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 26809121
    92095 3jce:o (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 26809121
    92096 3jce:p (3.2) BS01 rna ? GO:0000028 ... P0A7T3 26809121
    92097 3jce:q (3.2) BS01 rna ? GO:0000028 ... P0AG63 26809121
    92098 3jce:r (3.2) BS01 rna ? GO:0002181 ... P0A7T7 26809121
    92099 3jce:s (3.2) BS01 rna ? GO:0000028 ... P0A7U3 26809121
    92100 3jce:t (3.2) BS01 rna ? GO:0000028 ... P0A7U7 26809121
    92101 3jce:u (3.2) BS01 rna ? GO:0000028 ... P68679 26809121
    92102 3jce:x (3.2) BS01 rna 3.6.5.n1 GO:0003746 ... P60785 26809121
    92103 3jce:x (3.2) BS02 rna 3.6.5.n1 GO:0003746 ... P60785 26809121
    92104 3jce:x (3.2) BS03 rna 3.6.5.n1 GO:0003746 ... P60785 26809121
    92105 3jce:x (3.2) BS04 GNP 3.6.5.n1 GO:0003746 ... P60785 26809121
    92106 3jcj:1 (3.7) BS01 rna ? GO:0002181 ... P0A7T7 26973877
    92107 3jcj:2 (3.7) BS01 rna ? GO:0000028 ... P68679 26973877
    92108 3jcj:3 (3.7) BS01 rna ? GO:0000028 ... P0A7U7 26973877
    92109 3jcj:B (3.7) BS01 rna ? GO:0000027 ... P60422 26973877
    92110 3jcj:B (3.7) BS02 rna ? GO:0000027 ... P60422 26973877
    92111 3jcj:C (3.7) BS01 rna ? GO:0000027 ... P60438 26973877
    92112 3jcj:D (3.7) BS01 rna ? GO:0001070 ... P60723 26973877
    92113 3jcj:E (3.7) BS01 rna ? GO:0000027 ... P62399 26973877
    92114 3jcj:E (3.7) BS02 rna ? GO:0000027 ... P62399 26973877
    92115 3jcj:F (3.7) BS01 rna ? GO:0000027 ... P0AG55 26973877
    92116 3jcj:G (3.7) BS01 rna ? GO:0002181 ... P0A7R1 26973877
    92117 3jcj:H (3.7) BS01 rna ? GO:0000027 ... P0A7J7 26973877
    92118 3jcj:I (3.7) BS01 rna ? GO:0002181 ... P0AA10 26973877
    92119 3jcj:J (3.7) BS01 rna ? GO:0002181 ... P0ADY3 26973877
    92120 3jcj:J (3.7) BS02 rna ? GO:0002181 ... P0ADY3 26973877
    92121 3jcj:K (3.7) BS01 rna ? GO:0002181 ... P02413 26973877
    92122 3jcj:L (3.7) BS01 rna ? GO:0000027 ... P0ADY7 26973877
    92123 3jcj:L (3.7) BS02 rna ? GO:0000027 ... P0ADY7 26973877
    92124 3jcj:M (3.7) BS01 rna ? GO:0000027 ... P0AG44 26973877
    92125 3jcj:N (3.7) BS01 rna ? GO:0002181 ... P0C018 26973877
    92126 3jcj:N (3.7) BS02 rna ? GO:0002181 ... P0C018 26973877
    92127 3jcj:O (3.7) BS01 rna ? GO:0000027 ... P0A7K6 26973877
    92128 3jcj:O (3.7) BS02 rna ? GO:0000027 ... P0A7K6 26973877
    92129 3jcj:P (3.7) BS01 rna ? GO:0000027 ... P0A7L3 26973877
    92130 3jcj:Q (3.7) BS01 rna ? GO:0002181 ... P0AG48 26973877
    92131 3jcj:R (3.7) BS01 rna ? GO:0002181 ... P61175 26973877
    92132 3jcj:S (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 26973877
    92133 3jcj:T (3.7) BS01 rna ? GO:0000027 ... P60624 26973877
    92134 3jcj:U (3.7) BS01 rna ? GO:0000027 ... P68919 26973877
    92135 3jcj:U (3.7) BS02 rna ? GO:0000027 ... P68919 26973877
    92136 3jcj:V (3.7) BS01 rna ? GO:0000027 ... P0A7L8 26973877
    92137 3jcj:W (3.7) BS01 rna ? GO:0000027 ... P0A7M2 26973877
    92138 3jcj:X (3.7) BS01 rna ? GO:0000027 ... P0A7M6 26973877
    92139 3jcj:Y (3.7) BS01 rna ? GO:0000027 ... P0AG51 26973877
    92140 3jcj:Y (3.7) BS02 rna ? GO:0000027 ... P0AG51 26973877
    92141 3jcj:Z (3.7) BS01 rna ? GO:0000027 ... P0A7N4 26973877
    92142 3jcj:a (3.7) BS01 rna ? GO:0000027 ... P0A7N9 26973877
    92143 3jcj:a (3.7) BS02 rna ? GO:0000027 ... P0A7N9 26973877
    92144 3jcj:b (3.7) BS01 rna ? GO:0002181 ... P0A7P5 26973877
    92145 3jcj:c (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 26973877
    92146 3jcj:d (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 26973877
    92147 3jcj:d (3.7) BS02 ZN ? GO:0002181 ... P0A7Q6 26973877
    92148 3jcj:e (3.7) BS01 rna ? GO:0002181 ... P0A7J3 26973877
    92149 3jcj:f (3.7) BS01 rna ? GO:0003743 ... P0A705 26973877
    92150 3jcj:f (3.7) BS02 rna ? GO:0003743 ... P0A705 26973877
    92151 3jcj:f (3.7) BS03 rna ? GO:0003743 ... P0A705 26973877
    92152 3jcj:f (3.7) BS04 GNP ? GO:0003743 ... P0A705 26973877
    92153 3jcj:f (3.7) BS05 FME ? GO:0003743 ... P0A705 26973877
    92154 3jcj:h (3.7) BS01 rna ? GO:0000028 ... P0A7V3 26973877
    92155 3jcj:j (3.7) BS01 rna ? GO:0000028 ... P0A7V0 26973877
    92156 3jcj:k (3.7) BS01 rna ? GO:0000028 ... P0A7W1 26973877
    92157 3jcj:l (3.7) BS01 rna ? GO:0000028 ... P0A7V8 26973877
    92158 3jcj:m (3.7) BS01 rna ? GO:0000028 ... P02359 26973877
    92159 3jcj:n (3.7) BS01 rna ? GO:0002181 ... P02358 26973877
    92160 3jcj:o (3.7) BS01 rna ? GO:0000049 ... P0A7X3 26973877
    92161 3jcj:p (3.7) BS01 rna ? GO:0000028 ... P0A7W7 26973877
    92162 3jcj:q (3.7) BS01 rna ? GO:0002181 ... P0A7R9 26973877
    92163 3jcj:r (3.7) BS01 rna ? GO:0000049 ... P0A7R5 26973877
    92164 3jcj:s (3.7) BS01 rna ? GO:0000049 ... P0A7S9 26973877
    92165 3jcj:t (3.7) BS01 rna ? GO:0000049 ... P0A7S3 26973877
    92166 3jcj:u (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 26973877
    92167 3jcj:u (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 26973877
    92168 3jcj:w (3.7) BS01 rna ? GO:0000028 ... P0AG59 26973877
    92169 3jcj:x (3.7) BS01 rna ? GO:0000028 ... P0AG63 26973877
    92170 3jcj:y (3.7) BS01 rna ? GO:0000028 ... P0A7T3 26973877
    92171 3jcj:z (3.7) BS01 rna ? GO:0000028 ... P0A7U3 26973877
    92172 3jck:G (3.5) BS01 ZN 3.4.19.12 GO:0000266 ... P43588 26744777
    92173 3jcm:A (3.8) BS01 rna ? GO:0000244 ... P33334 26743623
    92174 3jcm:A (3.8) BS02 rna ? GO:0000244 ... P33334 26743623
    92175 3jcm:A (3.8) BS03 rna ? GO:0000244 ... P33334 26743623
    92176 3jcm:A (3.8) BS04 rna ? GO:0000244 ... P33334 26743623
    92177 3jcm:B (3.8) BS01 rna ? GO:0000245 ... P20053 26743623
    92178 3jcm:G (3.8) BS01 rna ? GO:0000244 ... P19735 26743623
    92179 3jcm:H (3.8) BS01 rna ? GO:0000244 ... P36048 26743623
    92180 3jcm:H (3.8) BS02 GTP ? GO:0000244 ... P36048 26743623
    92181 3jcm:I (3.8) BS01 rna ? GO:0000244 ... P49704 26743623
    92182 3jcm:I (3.8) BS02 rna ? GO:0000244 ... P49704 26743623
    92183 3jcm:J (3.8) BS01 rna ? GO:0000243 ... P43321 26743623
    92184 3jcm:K (3.8) BS01 rna ? GO:0000245 ... Q03338 26743623
    92185 3jcm:K (3.8) BS02 rna ? GO:0000245 ... Q03338 26743623
    92186 3jcm:L (3.8) BS01 rna ? GO:0000398 ... Q06819 26743623
    92187 3jcm:M (3.8) BS01 rna ? GO:0000245 ... P39990 26743623
    92188 3jcm:Q (3.8) BS01 rna ? GO:0000243 ... Q06217 26743623
    92189 3jcm:R (3.8) BS01 rna ? GO:0000243 ... P43321 26743623
    92190 3jcm:S (3.8) BS01 rna ? GO:0000243 ... P40018 26743623
    92191 3jcm:U (3.8) BS01 rna ? GO:0000243 ... Q06217 26743623
    92192 3jcn:0 (4.6) BS01 rna ? GO:0000027 ... P0A7N4 26973877
    92193 3jcn:1 (4.6) BS01 rna ? GO:0000027 ... P0A7N9 26973877
    92194 3jcn:2 (4.6) BS01 rna ? GO:0002181 ... P0A7P5 26973877
    92195 3jcn:3 (4.6) BS01 rna ? GO:0002181 ... P0A7Q1 26973877
    92196 3jcn:4 (4.6) BS01 rna ? GO:0002181 ... P0A7Q6 26973877
    92197 3jcn:C (4.6) BS01 rna ? GO:0000027 ... P60422 26973877
    92198 3jcn:C (4.6) BS02 rna ? GO:0000027 ... P60422 26973877
    92199 3jcn:D (4.6) BS01 rna ? GO:0000027 ... P60438 26973877
    92200 3jcn:E (4.6) BS01 rna ? GO:0001070 ... P60723 26973877
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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