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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    91801 3jbp:G (6.7) BS01 rna ? GO:0003723 ... Q8IL02 26432834
    91802 3jbp:H (6.7) BS01 rna ? GO:0003735 ... Q8IDR9 26432834
    91803 3jbp:I (6.7) BS01 rna ? GO:0000028 ... Q8IBN5 26432834
    91804 3jbp:J (6.7) BS01 rna ? GO:0003735 ... Q8IET7 26432834
    91805 3jbp:K (6.7) BS01 rna ? GO:0003735 ... O77395 26432834
    91806 3jbp:L (6.7) BS01 rna ? GO:0000462 ... Q8IM10 26432834
    91807 3jbp:L (6.7) BS02 rna ? GO:0000462 ... Q8IM10 26432834
    91808 3jbp:M (6.7) BS01 rna ? GO:0000462 ... Q8IAX5 26432834
    91809 3jbp:N (6.7) BS01 rna ? GO:0003735 ... Q8IK02 26432834
    91810 3jbp:P (6.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    91811 3jbp:Q (6.7) BS01 rna ? GO:0003735 ... O97248 26432834
    91812 3jbp:S (6.7) BS01 rna ? GO:0003676 ... Q8IIA2 26432834
    91813 3jbp:T (6.7) BS01 rna ? GO:0003735 ... C0H4K8 26432834
    91814 3jbp:U (6.7) BS01 rna ? GO:0003735 ... Q8IDB0 26432834
    91815 3jbp:V (6.7) BS01 rna ? GO:0003735 ... O77381 26432834
    91816 3jbp:W (6.7) BS01 rna ? GO:0003735 ... Q8I502 26432834
    91817 3jbp:X (6.7) BS01 rna ? GO:0003723 ... C0H5C2 26432834
    91818 3jbp:Y (6.7) BS01 rna ? GO:0000028 ... Q8IFP2 26432834
    91819 3jbp:Z (6.7) BS01 rna ? GO:0003735 ... Q8IHS5 26432834
    91820 3jbt:A (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    91821 3jbt:A (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    91822 3jbt:B (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    91823 3jbt:C (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    91824 3jbt:C (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    91825 3jbt:D (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    91826 3jbt:E (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    91827 3jbt:E (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    91828 3jbt:F (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    91829 3jbt:G (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    91830 3jbt:G (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    91831 3jbt:H (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    91832 3jbt:I (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    91833 3jbt:I (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    91834 3jbt:J (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    91835 3jbt:K (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    91836 3jbt:K (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    91837 3jbt:L (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    91838 3jbt:M (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    91839 3jbt:M (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    91840 3jbt:N (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    91841 3jbu:0 (3.64) BS01 rna ? GO:0000027 ... P0A7M2 26670735
    91842 3jbu:1 (3.64) BS01 rna ? GO:0000027 ... P0A7M6 26670735
    91843 3jbu:2 (3.64) BS01 rna ? GO:0000027 ... P0AG51 26670735
    91844 3jbu:2 (3.64) BS02 rna ? GO:0000027 ... P0AG51 26670735
    91845 3jbu:3 (3.64) BS01 rna ? GO:0000027 ... P0A7N4 26670735
    91846 3jbu:4 (3.64) BS01 rna ? GO:0000027 ... P0A7N9 26670735
    91847 3jbu:6 (3.64) BS01 rna ? GO:0002181 ... P0A7P5 26670735
    91848 3jbu:7 (3.64) BS01 rna ? GO:0002181 ... P0A7Q1 26670735
    91849 3jbu:8 (3.64) BS01 rna ? GO:0002181 ... P0A7Q6 26670735
    91850 3jbu:B (3.64) BS01 rna ? GO:0000028 ... P0A7V0 26670735
    91851 3jbu:C (3.64) BS01 rna ? GO:0000028 ... P0A7V3 26670735
    91852 3jbu:D (3.64) BS01 rna ? GO:0000028 ... P0A7V8 26670735
    91853 3jbu:E (3.64) BS01 rna ? GO:0000028 ... P0A7W1 26670735
    91854 3jbu:F (3.64) BS01 rna ? GO:0002181 ... P02358 26670735
    91855 3jbu:G (3.64) BS01 rna ? GO:0003723 ... P02359 26670735
    91856 3jbu:H (3.64) BS01 rna ? GO:0000028 ... P0A7W7 26670735
    91857 3jbu:I (3.64) BS01 rna ? GO:0000049 ... P0A7X3 26670735
    91858 3jbu:I (3.64) BS02 rna ? GO:0000049 ... P0A7X3 26670735
    91859 3jbu:J (3.64) BS01 rna ? GO:0000049 ... P0A7R5 26670735
    91860 3jbu:K (3.64) BS01 rna ? GO:0002181 ... P0A7R9 26670735
    91861 3jbu:L (3.64) BS01 rna ? GO:0000049 ... P0A7S3 26670735
    91862 3jbu:M (3.64) BS01 rna ? GO:0000049 ... P0A7S9 26670735
    91863 3jbu:M (3.64) BS02 rna ? GO:0000049 ... P0A7S9 26670735
    91864 3jbu:N (3.64) BS01 rna ? GO:0000028 ... P0AG59 26670735
    91865 3jbu:O (3.64) BS01 rna ? GO:0000028 ... P0ADZ4 26670735
    91866 3jbu:O (3.64) BS02 rna ? GO:0000028 ... P0ADZ4 26670735
    91867 3jbu:P (3.64) BS01 rna ? GO:0000028 ... P0A7T3 26670735
    91868 3jbu:Q (3.64) BS01 rna ? GO:0000028 ... P0AG63 26670735
    91869 3jbu:R (3.64) BS01 rna ? GO:0002181 ... P0A7T7 26670735
    91870 3jbu:S (3.64) BS01 rna ? GO:0000028 ... P0A7U3 26670735
    91871 3jbu:T (3.64) BS01 rna ? GO:0000028 ... P0A7U7 26670735
    91872 3jbu:U (3.64) BS01 rna ? GO:0000028 ... P68679 26670735
    91873 3jbu:c (3.64) BS01 rna ? GO:0000027 ... P60422 26670735
    91874 3jbu:d (3.64) BS01 rna ? GO:0000027 ... P60438 26670735
    91875 3jbu:e (3.64) BS01 rna ? GO:0001070 ... P60723 26670735
    91876 3jbu:f (3.64) BS01 rna ? GO:0000027 ... P62399 26670735
    91877 3jbu:f (3.64) BS02 rna ? GO:0000027 ... P62399 26670735
    91878 3jbu:f (3.64) BS03 rna ? GO:0000027 ... P62399 26670735
    91879 3jbu:g (3.64) BS01 rna ? GO:0000027 ... P0AG55 26670735
    91880 3jbu:h (3.64) BS01 rna ? GO:0002181 ... P0A7R1 26670735
    91881 3jbu:j (3.64) BS01 rna ? GO:0002181 ... P0AA10 26670735
    91882 3jbu:k (3.64) BS01 rna ? GO:0002181 ... P0ADY3 26670735
    91883 3jbu:l (3.64) BS01 rna ? GO:0002181 ... P02413 26670735
    91884 3jbu:m (3.64) BS01 rna ? GO:0000027 ... P0ADY7 26670735
    91885 3jbu:m (3.64) BS02 rna ? GO:0000027 ... P0ADY7 26670735
    91886 3jbu:n (3.64) BS01 rna ? GO:0000027 ... P0AG44 26670735
    91887 3jbu:o (3.64) BS01 rna ? GO:0002181 ... P0C018 26670735
    91888 3jbu:o (3.64) BS02 rna ? GO:0002181 ... P0C018 26670735
    91889 3jbu:p (3.64) BS01 rna ? GO:0000027 ... P0A7K6 26670735
    91890 3jbu:p (3.64) BS02 rna ? GO:0000027 ... P0A7K6 26670735
    91891 3jbu:q (3.64) BS01 rna ? GO:0000027 ... P0A7L3 26670735
    91892 3jbu:r (3.64) BS01 rna ? GO:0002181 ... P0AG48 26670735
    91893 3jbu:s (3.64) BS01 peptide ? GO:0002181 ... P61175 26670735
    91894 3jbu:s (3.64) BS02 rna ? GO:0002181 ... P61175 26670735
    91895 3jbu:t (3.64) BS01 rna ? GO:0000027 ... P0ADZ0 26670735
    91896 3jbu:u (3.64) BS01 rna ? GO:0000027 ... P60624 26670735
    91897 3jbu:w (3.64) BS01 rna ? GO:0000027 ... P68919 26670735
    91898 3jbu:y (3.64) BS01 rna ? GO:0000027 ... P0A7L8 26670735
    91899 3jbu:y (3.64) BS02 rna ? GO:0000027 ... P0A7L8 26670735
    91900 3jbv:0 (3.32) BS01 rna ? GO:0000027 ... P0A7M2 26670735
    91901 3jbv:1 (3.32) BS01 rna ? GO:0000027 ... P0A7M6 26670735
    91902 3jbv:2 (3.32) BS01 rna ? GO:0000027 ... P0AG51 26670735
    91903 3jbv:3 (3.32) BS01 rna ? GO:0000027 ... P0A7N4 26670735
    91904 3jbv:4 (3.32) BS01 rna ? GO:0000027 ... P0A7N9 26670735
    91905 3jbv:6 (3.32) BS01 rna ? GO:0002181 ... P0A7P5 26670735
    91906 3jbv:7 (3.32) BS01 rna ? GO:0002181 ... P0A7Q1 26670735
    91907 3jbv:8 (3.32) BS01 rna ? GO:0002181 ... P0A7Q6 26670735
    91908 3jbv:B (3.32) BS01 rna ? GO:0000028 ... P0A7V0 26670735
    91909 3jbv:C (3.32) BS01 rna ? GO:0000028 ... P0A7V3 26670735
    91910 3jbv:C (3.32) BS02 rna ? GO:0000028 ... P0A7V3 26670735
    91911 3jbv:D (3.32) BS01 rna ? GO:0000028 ... P0A7V8 26670735
    91912 3jbv:E (3.32) BS01 rna ? GO:0000028 ... P0A7W1 26670735
    91913 3jbv:F (3.32) BS01 rna ? GO:0002181 ... P02358 26670735
    91914 3jbv:G (3.32) BS01 rna ? GO:0003723 ... C4ZUJ6 26670735
    91915 3jbv:H (3.32) BS01 rna ? GO:0000028 ... P0A7W7 26670735
    91916 3jbv:I (3.32) BS01 rna ? GO:0000049 ... P0A7X3 26670735
    91917 3jbv:I (3.32) BS02 rna ? GO:0000049 ... P0A7X3 26670735
    91918 3jbv:J (3.32) BS01 rna ? GO:0000049 ... P0A7R5 26670735
    91919 3jbv:K (3.32) BS01 rna ? GO:0002181 ... P0A7R9 26670735
    91920 3jbv:L (3.32) BS01 rna ? GO:0000049 ... P0A7S3 26670735
    91921 3jbv:M (3.32) BS01 rna ? GO:0000049 ... P0A7S9 26670735
    91922 3jbv:N (3.32) BS01 rna ? GO:0000028 ... P0AG59 26670735
    91923 3jbv:O (3.32) BS01 rna ? GO:0003735 ... Q8X9M2 26670735
    91924 3jbv:O (3.32) BS02 rna ? GO:0003735 ... Q8X9M2 26670735
    91925 3jbv:P (3.32) BS01 rna ? GO:0000028 ... P0A7T3 26670735
    91926 3jbv:Q (3.32) BS01 rna ? GO:0000028 ... P0AG63 26670735
    91927 3jbv:R (3.32) BS01 rna ? GO:0002181 ... P0A7T7 26670735
    91928 3jbv:S (3.32) BS01 rna ? GO:0000028 ... P0A7U3 26670735
    91929 3jbv:T (3.32) BS01 rna ? GO:0000028 ... P0A7U7 26670735
    91930 3jbv:U (3.32) BS01 rna ? GO:0000028 ... P68679 26670735
    91931 3jbv:c (3.32) BS01 rna ? GO:0000027 ... P60422 26670735
    91932 3jbv:c (3.32) BS02 rna ? GO:0000027 ... P60422 26670735
    91933 3jbv:d (3.32) BS01 rna ? GO:0000027 ... P60438 26670735
    91934 3jbv:e (3.32) BS01 rna ? GO:0001070 ... P60723 26670735
    91935 3jbv:e (3.32) BS02 peptide ? GO:0001070 ... P60723 26670735
    91936 3jbv:f (3.32) BS01 rna ? GO:0000027 ... P62399 26670735
    91937 3jbv:f (3.32) BS02 rna ? GO:0000027 ... P62399 26670735
    91938 3jbv:g (3.32) BS01 rna ? GO:0000027 ... P0AG55 26670735
    91939 3jbv:h (3.32) BS01 rna ? GO:0002181 ... P0A7R1 26670735
    91940 3jbv:i (3.32) BS01 rna ? GO:0000027 ... P0A7J7 26670735
    91941 3jbv:j (3.32) BS01 rna ? GO:0002181 ... P0AA10 26670735
    91942 3jbv:k (3.32) BS01 rna ? GO:0002181 ... P0ADY3 26670735
    91943 3jbv:k (3.32) BS02 rna ? GO:0002181 ... P0ADY3 26670735
    91944 3jbv:l (3.32) BS01 rna ? GO:0002181 ... P02413 26670735
    91945 3jbv:m (3.32) BS01 rna ? GO:0000027 ... P0ADY7 26670735
    91946 3jbv:m (3.32) BS02 rna ? GO:0000027 ... P0ADY7 26670735
    91947 3jbv:n (3.32) BS01 rna ? GO:0000027 ... P0AG44 26670735
    91948 3jbv:o (3.32) BS01 rna ? GO:0002181 ... P0C018 26670735
    91949 3jbv:o (3.32) BS02 rna ? GO:0002181 ... P0C018 26670735
    91950 3jbv:p (3.32) BS01 rna ? GO:0000027 ... P0A7K6 26670735
    91951 3jbv:p (3.32) BS02 rna ? GO:0000027 ... P0A7K6 26670735
    91952 3jbv:q (3.32) BS01 rna ? GO:0000027 ... P0A7L3 26670735
    91953 3jbv:r (3.32) BS01 rna ? GO:0002181 ... P0AG48 26670735
    91954 3jbv:s (3.32) BS01 rna ? GO:0002181 ... P61175 26670735
    91955 3jbv:s (3.32) BS02 peptide ? GO:0002181 ... P61175 26670735
    91956 3jbv:t (3.32) BS01 rna ? GO:0000027 ... P0ADZ0 26670735
    91957 3jbv:u (3.32) BS01 rna ? GO:0000027 ... P60624 26670735
    91958 3jbv:w (3.32) BS01 rna ? GO:0000027 ... P68919 26670735
    91959 3jbv:y (3.32) BS01 rna ? GO:0000027 ... P0A7L8 26670735
    91960 3jbv:y (3.32) BS02 rna ? GO:0000027 ... P0A7L8 26670735
    91961 3jbw:B (4.6) BS01 dna ? GO:0003677 ... O13034 26548953
    91962 3jbw:B (4.6) BS02 dna ? GO:0003677 ... O13034 26548953
    91963 3jbw:D (4.6) BS01 dna ? GO:0003677 ... O13034 26548953
    91964 3jbw:D (4.6) BS02 dna ? GO:0003677 ... O13034 26548953
    91965 3jbx:B (3.4) BS01 dna ? GO:0003677 ... O13034 26548953
    91966 3jbx:B (3.4) BS02 dna ? GO:0003677 ... O13034 26548953
    91967 3jbx:D (3.4) BS01 dna ? GO:0003677 ... O13034 26548953
    91968 3jbx:D (3.4) BS02 dna ? GO:0003677 ... O13034 26548953
    91969 3jby:B (3.7) BS01 dna ? GO:0003677 ... O13034 26548953
    91970 3jby:B (3.7) BS02 dna ? GO:0003677 ... O13034 26548953
    91971 3jby:D (3.7) BS01 dna ? GO:0003677 ... O13034 26548953
    91972 3jby:D (3.7) BS02 dna ? GO:0003677 ... O13034 26548953
    91973 3jc2:1 (3.6) BS01 peptide ? GO:0005048 ... P38377 26721998
    91974 3jc6:7 (3.7) BS01 ZN 3.6.4.12 GO:0000727 ... P38132 26854665
    91975 3jc7:7 (4.8) BS01 ZN 3.6.4.12 GO:0000727 ... P38132 26854665
    91976 3jcd:0 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 26809121
    91977 3jcd:1 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 26809121
    91978 3jcd:2 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 26809121
    91979 3jcd:3 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 26809121
    91980 3jcd:4 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 26809121
    91981 3jcd:5 (3.7) BS01 rna ? GO:0000027 ... P0A7L0 26809121
    91982 3jcd:C (3.7) BS01 rna ? GO:0000027 ... P60422 26809121
    91983 3jcd:D (3.7) BS01 rna ? GO:0000027 ... P60438 26809121
    91984 3jcd:E (3.7) BS01 rna ? GO:0001070 ... P60723 26809121
    91985 3jcd:F (3.7) BS01 rna ? GO:0000027 ... P62399 26809121
    91986 3jcd:F (3.7) BS02 rna ? GO:0000027 ... P62399 26809121
    91987 3jcd:F (3.7) BS03 rna ? GO:0000027 ... P62399 26809121
    91988 3jcd:G (3.7) BS01 rna ? GO:0000027 ... P0AG55 26809121
    91989 3jcd:H (3.7) BS01 rna ? GO:0002181 ... P0A7R1 26809121
    91990 3jcd:I (3.7) BS01 rna ? GO:0000027 ... P0A7J7 26809121
    91991 3jcd:J (3.7) BS01 rna ? GO:0002181 ... P0AA10 26809121
    91992 3jcd:K (3.7) BS01 rna ? GO:0002181 ... P0ADY3 26809121
    91993 3jcd:K (3.7) BS02 rna ? GO:0002181 ... P0ADY3 26809121
    91994 3jcd:L (3.7) BS01 rna ? GO:0002181 ... P02413 26809121
    91995 3jcd:M (3.7) BS01 rna ? GO:0000027 ... P0ADY7 26809121
    91996 3jcd:N (3.7) BS01 rna ? GO:0000027 ... P0AG44 26809121
    91997 3jcd:O (3.7) BS01 rna ? GO:0002181 ... P0C018 26809121
    91998 3jcd:O (3.7) BS02 rna ? GO:0002181 ... P0C018 26809121
    91999 3jcd:P (3.7) BS01 rna ? GO:0000027 ... P0A7K6 26809121
    92000 3jcd:P (3.7) BS02 rna ? GO:0000027 ... P0A7K6 26809121
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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