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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9001 1g5q:D (2.57) BS01 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    9002 1g5q:D (2.57) BS02 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    9003 1g5q:D (2.57) BS03 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9004 1g5q:G (2.57) BS01 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    9005 1g5q:G (2.57) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9006 1g5q:L (2.57) BS01 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    9007 1g5q:L (2.57) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9008 1g5s:A (2.61) BS01 I17 2.7.11.22 GO:0000082 ... P24941 11170642 PDBbind: -logKd/Ki=7.32, IC50=48nM
    BindingDB: IC50=48nM
    9009 1g5t:A (1.8) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    9010 1g5t:A (1.8) BS02 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    9011 1g5y:B (2.0) BS01 REA ? GO:0003677 ... P19793 10970886
    9012 1g5y:C (2.0) BS01 REA ? GO:0003677 ... P19793 10970886
    9013 1g60:A (1.74) BS01 SAM 2.1.1.72 GO:0003676 ... P23192 12954781
    9014 1g60:B (1.74) BS01 SAM 2.1.1.72 GO:0003676 ... P23192 12954781
    9015 1g63:A (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9016 1g63:A (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9017 1g63:B (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9018 1g63:B (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9019 1g63:C (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9020 1g63:C (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9021 1g63:D (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9022 1g63:D (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9023 1g63:E (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9024 1g63:E (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9025 1g63:F (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9026 1g63:F (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9027 1g63:G (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9028 1g63:G (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9029 1g63:H (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9030 1g63:H (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9031 1g63:I (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9032 1g63:I (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9033 1g63:J (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9034 1g63:J (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9035 1g63:K (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9036 1g63:K (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9037 1g63:L (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9038 1g63:L (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    9039 1g64:A (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    9040 1g64:A (2.1) BS02 B12 2.5.1.17 GO:0005524 ... P31570 11148030
    9041 1g64:A (2.1) BS03 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    9042 1g64:B (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    9043 1g64:B (2.1) BS02 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    9044 1g65:G (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P21243 N/A
    9045 1g65:H (2.25) BS01 MG 3.4.25.1 GO:0004298 ... P25043 N/A
    9046 1g65:I (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P25451 N/A
    9047 1g65:K (2.25) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 N/A
    9048 1g65:K (2.25) BS02 MG 3.4.25.1 GO:0004298 ... P30656 N/A
    9049 1g65:L (2.25) BS01 peptide 3.4.25.1 GO:0000502 ... P23724 N/A
    9050 1g65:L (2.25) BS02 MG 3.4.25.1 GO:0000502 ... P23724 N/A
    9051 1g65:L (2.25) BS03 MG 3.4.25.1 GO:0000502 ... P23724 N/A
    9052 1g65:N (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P38624 N/A
    9053 1g65:Y (2.25) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 N/A
    9054 1g65:Z (2.25) BS01 peptide 3.4.25.1 GO:0000502 ... P23724 N/A
    9055 1g66:A (0.9) BS01 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    9056 1g66:A (0.9) BS02 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    9057 1g66:A (0.9) BS03 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    9058 1g67:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    9059 1g67:A (1.4) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    9060 1g67:A (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    9061 1g67:A (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    9062 1g67:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    9063 1g67:B (1.4) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    9064 1g67:B (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    9065 1g67:B (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    9066 1g69:A (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    9067 1g69:A (1.5) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    9068 1g69:A (1.5) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    9069 1g69:A (1.5) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    9070 1g69:B (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    9071 1g69:B (1.5) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    9072 1g69:B (1.5) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    9073 1g69:B (1.5) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    9074 1g6c:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    9075 1g6c:A (1.4) BS02 IFP 2.5.1.3 GO:0000287 ... P39594 11513589
    9076 1g6c:A (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    9077 1g6c:A (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    9078 1g6c:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    9079 1g6c:B (1.4) BS02 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    9080 1g6c:B (1.4) BS03 IFP 2.5.1.3 GO:0000287 ... P39594 11513589
    9081 1g6c:B (1.4) BS04 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    9082 1g6c:B (1.4) BS05 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    9083 1g6h:A (1.6) BS01 ADP ? GO:0005524 ... Q58663 11470432
    9084 1g6i:A (1.59) BS01 DMJ 3.2.1.113 GO:0004559 ... P32906 N/A
    9085 1g6n:A (2.1) BS01 CMP ? GO:0003677 ... P0ACJ8 11124031
    9086 1g6n:B (2.1) BS01 CMP ? GO:0003677 ... P0ACJ8 11124031
    9087 1g6o:A (2.5) BS01 ADP ? GO:0000166 ... Q7BK04 11163218
    9088 1g6o:B (2.5) BS01 ADP ? GO:0000166 ... Q7BK04 11163218
    9089 1g6r:A (2.8) BS01 peptide ? GO:0002250 ... P01738 10755612
    9090 1g6s:A (1.5) BS01 S3P 2.5.1.19 GO:0003824 ... P0A6D3 11171958 PDBbind: -logKd/Ki=5.15, Kd=7uM
    BindingDB: Kd=7000nM
    9091 1g6s:A (1.5) BS02 GPJ 2.5.1.19 GO:0003824 ... P0A6D3 11171958
    9092 1g6t:A (1.6) BS01 PO4 2.5.1.19 GO:0003824 ... P0A6D3 11171958
    9093 1g6t:A (1.6) BS02 S3P 2.5.1.19 GO:0003824 ... P0A6D3 11171958 BindingDB: Kd=7000nM
    9094 1g6v:A (3.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004089 ... P00921 11342547
    9095 1g71:A (2.3) BS01 ZN 2.7.7.- GO:0000428 ... Q9P9H1 11135672
    9096 1g71:B (2.3) BS01 ZN 2.7.7.- GO:0000428 ... Q9P9H1 11135672
    9097 1g72:A (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    9098 1g72:A (1.9) BS02 PQQ 1.1.2.7 GO:0005509 ... P38539 11149955
    9099 1g72:C (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    9100 1g72:C (1.9) BS02 PQQ 1.1.2.7 GO:0005509 ... P38539 11149955
    9101 1g74:A (1.7) BS01 OLA ? GO:0005324 ... P04117 14594993 MOAD: Kd=0.3uM
    PDBbind: -logKd/Ki=6.52, Kd=0.30uM
    9102 1g76:A (2.2) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9103 1g76:A (2.2) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9104 1g76:A (2.2) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9105 1g77:A (2.1) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9106 1g77:A (2.1) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9107 1g77:A (2.1) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9108 1g78:A (2.2) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9109 1g78:A (2.2) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9110 1g78:A (2.2) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9111 1g78:A (2.2) BS04 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9112 1g79:A (2.0) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9113 1g79:A (2.0) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9114 1g79:A (2.0) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9115 1g79:A (2.0) BS04 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    9116 1g7a:B (1.2) BS01 peptide ? GO:0005179 ... P01308 11468392
    9117 1g7a:B (1.2) BS02 peptide ? GO:0005179 ... P01308 11468392
    9118 1g7a:F (1.2) BS01 peptide ? GO:0005179 ... P01308 11468392
    9119 1g7a:F (1.2) BS02 peptide ? GO:0005179 ... P01308 11468392
    9120 1g7b:B (1.3) BS01 peptide ? GO:0005179 ... P01308 11468392
    9121 1g7b:B (1.3) BS02 peptide ? GO:0005179 ... P01308 11468392
    9122 1g7b:F (1.3) BS01 peptide ? GO:0005179 ... P01308 11468392
    9123 1g7b:F (1.3) BS02 peptide ? GO:0005179 ... P01308 11468392
    9124 1g7b:F (1.3) BS03 peptide ? GO:0005179 ... P01308 11468392
    9125 1g7c:A (2.05) BS01 5GP ? GO:0000329 ... P02994 11373622
    9126 1g7s:A (2.0) BS01 GDP ? GO:0003743 ... O26359 11114334
    9127 1g7t:A (2.0) BS01 GNP ? GO:0003743 ... O26359 11114334
    9128 1g7u:A (2.8) BS01 PEP 2.5.1.55 GO:0005737 ... P0A715 11371194
    9129 1g7v:A (2.4) BS01 PAI 2.5.1.55 GO:0005737 ... P0A715 11371194 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    9130 1g7w:A (2.2) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 11148029
    9131 1g7x:A (2.2) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 11148029
    9132 1g85:A (1.8) BS01 3OL ? GO:0005549 ... P07435 11114310 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    9133 1g85:A (1.8) BS02 3OL ? GO:0005549 ... P07435 11114310 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    9134 1g85:B (1.8) BS01 3OL ? GO:0005549 ... P07435 11114310 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    9135 1g86:A (1.8) BS01 NEQ 3.1.1.5 GO:0002667 ... Q05315 11834744
    9136 1g86:A (1.8) BS02 NEQ 3.1.1.5 GO:0002667 ... Q05315 11834744
    9137 1g8f:A (1.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    9138 1g8f:A (1.95) BS02 SO4 2.7.7.4 GO:0000096 ... P08536 11157739
    9139 1g8f:A (1.95) BS03 SO4 2.7.7.4 GO:0000096 ... P08536 11157739
    9140 1g8g:A (2.6) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    9141 1g8g:A (2.6) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    9142 1g8g:B (2.6) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    9143 1g8g:B (2.6) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    9144 1g8h:A (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    9145 1g8h:A (2.8) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    9146 1g8h:A (2.8) BS03 POP 2.7.7.4 GO:0000096 ... P08536 11157739
    9147 1g8h:B (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    9148 1g8h:B (2.8) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    9149 1g8h:B (2.8) BS03 POP 2.7.7.4 GO:0000096 ... P08536 11157739
    9150 1g8i:A (1.9) BS01 CA ? GO:0005245 ... P62166 11092894
    9151 1g8i:A (1.9) BS02 CA ? GO:0005245 ... P62166 11092894
    9152 1g8i:A (1.9) BS03 CA ? GO:0005245 ... P62166 11092894
    9153 1g8i:B (1.9) BS01 CA ? GO:0005245 ... P62166 11092894
    9154 1g8i:B (1.9) BS02 CA ? GO:0005245 ... P62166 11092894
    9155 1g8i:B (1.9) BS03 CA ? GO:0005245 ... P62166 11092894
    9156 1g8j:A (2.03) BS01 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9157 1g8j:A (2.03) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9158 1g8j:A (2.03) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9159 1g8j:B (2.03) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    9160 1g8j:C (2.03) BS01 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9161 1g8j:C (2.03) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9162 1g8j:C (2.03) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9163 1g8j:D (2.03) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    9164 1g8k:A (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9165 1g8k:A (1.64) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9166 1g8k:A (1.64) BS03 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9167 1g8k:A (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9168 1g8k:B (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    9169 1g8k:C (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9170 1g8k:C (1.64) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9171 1g8k:C (1.64) BS03 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9172 1g8k:C (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9173 1g8k:D (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    9174 1g8k:E (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9175 1g8k:E (1.64) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9176 1g8k:E (1.64) BS03 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9177 1g8k:E (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9178 1g8k:F (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    9179 1g8k:G (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9180 1g8k:G (1.64) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9181 1g8k:G (1.64) BS03 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9182 1g8k:G (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    9183 1g8k:H (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    9184 1g8m:A (1.75) BS01 G 2.1.2.3
    3.5.4.10
    GO:0003824 ... P31335 11323713
    9185 1g8o:A (2.3) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    9186 1g8o:A (2.3) BS02 U5P 2.4.1.87 GO:0005975 ... P14769 11179209
    9187 1g8s:A (1.6) BS01 MET 2.1.1.- GO:0000494 ... Q58108 N/A
    9188 1g8t:A (1.1) BS01 SO4 3.1.30.2 GO:0003676 ... P13717 10771425
    9189 1g8t:B (1.1) BS01 SO4 3.1.30.2 GO:0003676 ... P13717 10771425
    9190 1g8x:A (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799
    11226153
    9191 1g8x:A (2.8) BS02 ADP ? GO:0003774 ... P05095
    P08799
    11226153
    9192 1g8x:B (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799
    11226153
    9193 1g8x:B (2.8) BS02 ADP ? GO:0003774 ... P05095
    P08799
    11226153
    9194 1g8z:D (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    9195 1g8z:F (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    9196 1g8z:G (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    9197 1g8z:H (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    9198 1g93:A (2.5) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 11179209
    9199 1g93:A (2.5) BS02 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    9200 1g93:A (2.5) BS03 UPG 2.4.1.87 GO:0005975 ... P14769 11179209

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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